STRINGSTRING
AB675_7426 AB675_7426 AB675_10221 AB675_10221 AB675_9446 AB675_9446 AB675_4067 AB675_4067 AB675_3849 AB675_3849 AB675_3821 AB675_3821 AB675_7189 AB675_7189 AB675_11682 AB675_11682 AB675_4746 AB675_4746 AB675_10418 AB675_10418 AB675_3667 AB675_3667 AB675_11789 AB675_11789 AB675_1469 AB675_1469 AB675_3912 AB675_3912 AB675_3931 AB675_3931 AB675_12142 AB675_12142 AB675_4518 AB675_4518 AB675_7605 AB675_7605 AB675_10674 AB675_10674 AB675_10619 AB675_10619 AB675_10679 AB675_10679 AB675_9170 AB675_9170 AB675_9233 AB675_9233 RPS1 RPS1 AB675_9562 AB675_9562 AB675_1745 AB675_1745 RPS0 RPS0 AB675_6716 AB675_6716 AB675_6264 AB675_6264 AB675_6313 AB675_6313 AB675_6383 AB675_6383 AB675_8802 AB675_8802 AB675_8786 AB675_8786 AB675_2790 AB675_2790 AB675_689 AB675_689 AB675_627 AB675_627 AB675_8978 AB675_8978 AB675_1705 AB675_1705 AB675_8961 AB675_8961 AB675_10231 AB675_10231 AB675_151 AB675_151 AB675_3820 AB675_3820 AB675_11617 AB675_11617 AB675_9447 AB675_9447 AB675_1703 AB675_1703 AB675_3474 AB675_3474 AB675_3492 AB675_3492 AB675_4792 AB675_4792 AB675_7761 AB675_7761 AB675_11880 AB675_11880 AB675_8959 AB675_8959 AB675_7979 AB675_7979 AB675_4340 AB675_4340 AB675_9114 AB675_9114 AB675_12064 AB675_12064 SPB1 SPB1 AB675_5595 AB675_5595 AB675_9671 AB675_9671 AB675_9552 AB675_9552 AB675_3199 AB675_3199 AB675_2218 AB675_2218 AB675_6982 AB675_6982 AB675_11995 AB675_11995 AB675_11325 AB675_11325 AB675_6434 AB675_6434 AB675_4229 AB675_4229 AB675_5951 AB675_5951 AB675_10590 AB675_10590 AB675_8127 AB675_8127 AB675_11609 AB675_11609 AB675_11483 AB675_11483 YTM1 YTM1 AB675_9872 AB675_9872 AB675_2070 AB675_2070 AB675_7127 AB675_7127 AB675_6738 AB675_6738 AB675_6430 AB675_6430 AB675_6656 AB675_6656 AB675_6147 AB675_6147 AB675_6493 AB675_6493 AB675_8330 AB675_8330 AB675_8695 AB675_8695 AB675_797 AB675_797 AB675_385 AB675_385 AB675_2720 AB675_2720 AB675_9923 AB675_9923 AB675_566 AB675_566 NAT10 NAT10 AB675_4454 AB675_4454 AB675_10104 AB675_10104 AB675_11875 AB675_11875 AB675_6001 AB675_6001 AB675_7977 AB675_7977 AB675_4520 AB675_4520 AB675_3315 AB675_3315 AB675_2066 AB675_2066 AB675_6288 AB675_6288 AB675_6319 AB675_6319 AB675_6278 AB675_6278 AB675_5435 AB675_5435 AB675_8791 AB675_8791 AB675_6213 AB675_6213 AB675_8280 AB675_8280 AB675_732 AB675_732 AB675_569 AB675_569 AB675_3587 AB675_3587 AB675_3225 AB675_3225 AB675_6088 AB675_6088 AB675_1298 AB675_1298 AB675_4664 AB675_4664 AB675_8973 AB675_8973 AB675_7642 AB675_7642 AB675_7906 AB675_7906 ERB1 ERB1 AB675_9240 AB675_9240 AB675_9730 AB675_9730 AB675_4984 AB675_4984 AB675_2101 AB675_2101 AB675_6983 AB675_6983 AB675_8053 AB675_8053 AB675_7772 AB675_7772 AB675_8581 AB675_8581 AB675_8331 AB675_8331 AB675_6269 AB675_6269 NOP7 NOP7 AB675_5652 AB675_5652 AB675_500 AB675_500 AB675_1880 AB675_1880 AB675_496 AB675_496 AB675_6636 AB675_6636 AB675_599 AB675_599
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AB675_7426ATP-dependent rRNA helicase RRP3; Belongs to the DEAD box helicase family. (407 aa)
AB675_10221Protein sof1. (398 aa)
AB675_9446Bms1-type G domain-containing protein. (761 aa)
AB675_4067Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (560 aa)
AB675_3849Ribosome biogenesis protein TSR3. (368 aa)
AB675_382160S ribosomal protein L18-B. (189 aa)
AB675_718960S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (187 aa)
AB675_1168240S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (195 aa)
AB675_4746Putative nucleolar complex protein 14. (891 aa)
AB675_10418Sas10 domain-containing protein. (605 aa)
AB675_3667Ribosomal RNA-processing protein 7. (299 aa)
AB675_1178940S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (253 aa)
AB675_146940S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (1383 aa)
AB675_391260S ribosomal protein L34-B. (94 aa)
AB675_3931Exosome complex component SKI6. (260 aa)
AB675_12142rRNA-processing protein EBP2. (419 aa)
AB675_4518rRNA biogenesis protein rrp5. (1771 aa)
AB675_7605Uncharacterized protein. (477 aa)
AB675_10674Uncharacterized protein. (499 aa)
AB675_1061940S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (255 aa)
AB675_10679U3 small nucleolar RNA-associated protein 5. (862 aa)
AB675_9170Pre-rRNA-processing protein rix1. (770 aa)
AB675_9233Pre-rRNA-processing protein ipi1. (333 aa)
RPS140S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (259 aa)
AB675_9562Putative RNA 3'-terminal phosphate cyclase-like protein. (406 aa)
AB675_1745U3 small nucleolar RNA-associated protein 15. (533 aa)
RPS040S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (289 aa)
AB675_6716Exosome complex component RRP46. (238 aa)
AB675_6264Nuclear nucleic acid-binding protein C1D. (267 aa)
AB675_6313rRNA 2'-O-methyltransferase fibrillarin. (254 aa)
AB675_6383Nucleolar protein 56. (528 aa)
AB675_8802Uncharacterized protein. (568 aa)
AB675_8786U3 small nucleolar RNA-associated protein 6. (383 aa)
AB675_2790Uncharacterized protein. (220 aa)
AB675_689Pre-rRNA-processing protein PNO1. (269 aa)
AB675_627U3 small nucleolar RNA-associated protein 4. (904 aa)
AB675_8978RNA 3'-terminal phosphate cyclase. (453 aa)
AB675_1705Uncharacterized protein. (430 aa)
AB675_896140S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (129 aa)
AB675_10231KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (336 aa)
AB675_151rRNA biogenesis protein rrp36. (320 aa)
AB675_3820Exosome complex component rrp4. (342 aa)
AB675_1161737S ribosomal protein NAM9, mitochondrial. (407 aa)
AB675_9447Putative U3 small nucleolar RNA-associated protein 7. (567 aa)
AB675_1703Uncharacterized protein. (271 aa)
AB675_347440S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (161 aa)
AB675_349240S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (125 aa)
AB675_4792U3 small nucleolar ribonucleoprotein imp3. (188 aa)
AB675_77615'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1042 aa)
AB675_11880Casein kinase-like protein; Belongs to the protein kinase superfamily. (323 aa)
AB675_8959Uncharacterized protein. (460 aa)
AB675_797940S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
AB675_434040S ribosomal protein S19. (154 aa)
AB675_9114RNase_PH domain-containing protein. (393 aa)
AB675_12064Serine/threonine-protein kinase rio2. (429 aa)
SPB1AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (827 aa)
AB675_559520S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (436 aa)
AB675_9671Protein LTV1. (483 aa)
AB675_955237S ribosomal protein S22, mitochondrial. (1052 aa)
AB675_3199Uncharacterized protein. (363 aa)
AB675_221840S ribosomal protein S22; Belongs to the universal ribosomal protein uS8 family. (130 aa)
AB675_698240S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (202 aa)
AB675_11995Exosome complex component MTR3. (317 aa)
AB675_11325Putative U3 small nucleolar RNA-associated protein 18. (606 aa)
AB675_6434Tethering factor for nuclear proteasome sts1; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins. (453 aa)
AB675_4229Exosome complex component CSL4. (203 aa)
AB675_595140S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (203 aa)
AB675_10590RNase_PH domain-containing protein. (423 aa)
AB675_812740S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (135 aa)
AB675_11609U3 small nucleolar RNA-associated protein 20. (2527 aa)
AB675_11483Exosome complex component rrp45. (297 aa)
YTM1Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (462 aa)
AB675_9872Putative 60S ribosomal protein L28e. (150 aa)
AB675_2070ATP-dependent RNA helicase ROK1. (622 aa)
AB675_712740S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
AB675_6738Ribosome biogenesis protein bms1. (1165 aa)
AB675_6430ATP-dependent RNA helicase mtr4. (1078 aa)
AB675_6656CBF domain-containing protein. (271 aa)
AB675_614740S ribosomal protein S17. (149 aa)
AB675_6493U3 small nucleolar RNA-associated-like protein. (1025 aa)
AB675_8330SpoU_methylase domain-containing protein. (115 aa)
AB675_8695U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (717 aa)
AB675_797Uncharacterized protein. (324 aa)
AB675_385Uncharacterized protein. (272 aa)
AB675_2720Putative WD repeat-containing protein. (944 aa)
AB675_9923Williams-Beuren syndrome chromosomal region 27 protein. (247 aa)
AB675_56640S ribosomal protein S28. (68 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1099 aa)
AB675_4454Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (125 aa)
AB675_10104U3 small nucleolar ribonucleoprotein IMP4. (293 aa)
AB675_11875Pre-rRNA-processing protein crb3/ipi3. (533 aa)
AB675_600140S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (122 aa)
AB675_797740S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (143 aa)
AB675_4520RNA exonuclease 4. (391 aa)
AB675_331540S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (251 aa)
AB675_2066U3 small nucleolar RNA-associated protein 17. (1078 aa)
AB675_628840S ribosomal protein S27. (328 aa)
AB675_6319Putative methyltransferase NSUN3; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (309 aa)
AB675_6278Ribonuclease Z 1. (997 aa)
AB675_5435Periodic tryptophan-like protein. (902 aa)
AB675_8791Polynucleotide 5'-hydroxyl-kinase grc3. (592 aa)
AB675_6213Exosome complex component RRP40. (287 aa)
AB675_8280Uncharacterized protein. (373 aa)
AB675_732Uncharacterized protein. (392 aa)
AB675_569rRNA-processing protein FCF1. (194 aa)
AB675_358760S ribosomal protein L43. (92 aa)
AB675_3225U3 small nucleolar RNA-associated protein 22. (1086 aa)
AB675_608860S ribosomal protein L2. (254 aa)
AB675_1298tRNA acetyltransferase TAN1. (367 aa)
AB675_4664U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (267 aa)
AB675_8973Ribosomal RNA small subunit methyltransferase NEP1. (256 aa)
AB675_7642Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (124 aa)
AB675_790640S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (215 aa)
ERB1Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (1342 aa)
AB675_9240U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (656 aa)
AB675_9730Putative ATP-dependent RNA helicase DHR1. (1243 aa)
AB675_4984rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (410 aa)
AB675_2101Nucleolar protein 58. (619 aa)
AB675_698340S ribosomal protein S10-B. (176 aa)
AB675_8053Exosome complex exonuclease RRP6. (810 aa)
AB675_7772ATP-dependent RNA helicase dbp8; Belongs to the DEAD box helicase family. (530 aa)
AB675_858140S ribosomal protein S20. (117 aa)
AB675_8331rRNA methyltransferase 1, mitochondrial. (314 aa)
AB675_6269U3 small nucleolar RNA-associated protein 10. (1788 aa)
NOP7Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (705 aa)
AB675_5652Putative RNA-binding protein. (801 aa)
AB675_500Putative U3 small nucleolar RNA-associated protein 13. (920 aa)
AB675_1880Uncharacterized protein. (493 aa)
AB675_496Uncharacterized protein. (572 aa)
AB675_663640S ribosomal protein S4. (385 aa)
AB675_599Ribosomal RNA-processing protein 17. (235 aa)
Your Current Organism:
Phialophora attae
NCBI taxonomy Id: 1664694
Other names: CBS 131958, P. attae, Phialophora attae Attili-Angelis, Duarte, Stielow & de Hoog, 2014
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