STRINGSTRING
AB675_2361 AB675_2361 AB675_10120 AB675_10120 AB675_11101 AB675_11101 AB675_5999 AB675_5999 AB675_3017 AB675_3017 AB675_5238 AB675_5238 AB675_7454 AB675_7454 AB675_10781 AB675_10781 AB675_8452 AB675_8452 AB675_2852 AB675_2852 AB675_4211 AB675_4211 AB675_4965 AB675_4965 AB675_10998 AB675_10998 AB675_3950 AB675_3950 AB675_10782 AB675_10782 AB675_280 AB675_280 AB675_476 AB675_476 AB675_2061 AB675_2061 AB675_8603 AB675_8603 AB675_1574 AB675_1574 AB675_4103 AB675_4103 AB675_3787 AB675_3787 AB675_3054 AB675_3054 AB675_5020 AB675_5020 AB675_9074 AB675_9074 AB675_8332 AB675_8332
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AB675_2361DNA-directed RNA polymerases I, II, and III subunit RPABC2. (154 aa)
AB675_10120Histone H2B; Belongs to the histone H2B family. (170 aa)
AB675_11101TATA-box-binding protein. (230 aa)
AB675_5999Uncharacterized protein. (471 aa)
AB675_3017DNA repair helicase RAD25. (838 aa)
AB675_5238BTB domain-containing protein. (876 aa)
AB675_7454DNA repair helicase rad15. (778 aa)
AB675_10781Putative RNA polymerase II transcription factor B subunit 1. (158 aa)
AB675_8452RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (493 aa)
AB675_2852DNA-directed RNA polymerases I and III subunit RPAC1. (356 aa)
AB675_4211DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (144 aa)
AB675_4965DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1190 aa)
AB675_10998RNA polymerase II transcription factor B subunit 4. (445 aa)
AB675_3950RPA43_OB domain-containing protein. (478 aa)
AB675_10782Putative RNA polymerase II transcription factor B subunit 1. (452 aa)
AB675_280RNA polymerase II transcription factor B subunit 3. (270 aa)
AB675_476Serine/threonine-protein kinase KIN28; Belongs to the protein kinase superfamily. (415 aa)
AB675_2061DNA-directed RNA polymerases I, II, and III subunit RPABC5. (79 aa)
AB675_8603HMG box-containing protein C19G7.04. (785 aa)
AB675_1574DNA-directed RNA polymerases I, II, and III subunit RPABC1. (237 aa)
AB675_4103RNA polymerase I-specific transcription initiation factor rrn3. (677 aa)
AB675_3787DNA-binding protein reb1. (1215 aa)
AB675_3054Ubiquitin-60S ribosomal protein L40. (69 aa)
AB675_5020Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (131 aa)
AB675_9074Cyclin CCL1; Belongs to the cyclin family. (401 aa)
AB675_8332Chromatin remodeling factor mit1. (1573 aa)
Your Current Organism:
Phialophora attae
NCBI taxonomy Id: 1664694
Other names: CBS 131958, P. attae, Phialophora attae Attili-Angelis, Duarte, Stielow & de Hoog, 2014
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