45 items (Phialophora attae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AB675_4198	DNA-directed RNA polymerase II subunit RPB3. (199 aa)
	AB675_4845	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (667 aa)
	AB675_11664	DNA-directed RNA polymerase II subunit RPB2. (445 aa)
	AB675_1284	Transcription elongation factor spt6. (1188 aa)
	AB675_8947	RPOL4c domain-containing protein. (156 aa)
	AB675_3956	DNA-directed RNA polymerase II subunit RPB1. (304 aa)
	AB675_3017	DNA repair helicase RAD25. (838 aa)
	AB675_7454	DNA repair helicase rad15. (778 aa)
	AB675_10781	Putative RNA polymerase II transcription factor B subunit 1. (158 aa)
	AB675_5582	Uncharacterized protein. (743 aa)
	AB675_9680	CFEM domain-containing protein. (332 aa)
	AB675_8452	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (493 aa)
	AB675_2305	DNA-directed RNA polymerase II subunit rpb7. (167 aa)
	AB675_11723	Uncharacterized protein. (576 aa)
	AB675_3207	Transcription elongation factor spt5. (1377 aa)
	AB675_9928	DNA-directed RNA polymerase II subunit RPB11. (167 aa)
	AB675_4211	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (144 aa)
	AB675_1283	Transcription elongation factor spt6. (303 aa)
	AB675_10998	RNA polymerase II transcription factor B subunit 4. (445 aa)
	AB675_10782	Putative RNA polymerase II transcription factor B subunit 1. (452 aa)
	AB675_8184	Uncharacterized protein. (551 aa)
	AB675_9675	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (123 aa)
	AB675_3898	Uncharacterized protein. (662 aa)
	AB675_3328	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1064 aa)
	AB675_2304	Uncharacterized protein. (519 aa)
	AB675_280	RNA polymerase II transcription factor B subunit 3. (270 aa)
	AB675_476	Serine/threonine-protein kinase KIN28; Belongs to the protein kinase superfamily. (415 aa)
	AB675_5621	Uncharacterized protein. (3155 aa)
	AB675_2061	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (79 aa)
	AB675_1574	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (237 aa)
	AB675_5871	Uncharacterized protein. (465 aa)
	AB675_6284	Cell division control protein 73. (421 aa)
	AB675_4933	Transcription initiation factor IIF subunit beta. (383 aa)
	AB675_11665	DNA-directed RNA polymerase II subunit RPB2; Belongs to the RNA polymerase beta chain family. (724 aa)
	AB675_10013	TPR_REGION domain-containing protein. (427 aa)
	AB675_2987	Transcription factor iws1. (400 aa)
	AB675_3957	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1431 aa)
	AB675_8178	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (589 aa)
	AB675_7709	RNA polymerase-associated protein. (606 aa)
	AB675_11524	Nuclear cap-binding protein subunit 2. (168 aa)
	AB675_9074	Cyclin CCL1; Belongs to the cyclin family. (401 aa)
	AB675_9864	Nuclear cap-binding protein subunit 1. (851 aa)
	AB675_2361	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (154 aa)
	AB675_9665	Tetratricopeptide repeat protein 1. (1223 aa)
	AB675_886	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (132 aa)

Your Current Organism:

Phialophora attae

NCBI taxonomy Id: 1664694
Other names: CBS 131958, P. attae, Phialophora attae Attili-Angelis, Duarte, Stielow & de Hoog, 2014

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AB675_10013	AB675_11664	A0A0N1NY80	A0A0N0NI85	TPR_REGION domain-containing protein.	DNA-directed RNA polymerase II subunit RPB2.	0.460
AB675_10013	AB675_11665	A0A0N1NY80	A0A0N1NVV2	TPR_REGION domain-containing protein.	DNA-directed RNA polymerase II subunit RPB2; Belongs to the RNA polymerase beta chain family.	0.460
AB675_10013	AB675_2061	A0A0N1NY80	A0A0N1HCW2	TPR_REGION domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.647
AB675_10013	AB675_2361	A0A0N1NY80	A0A0N1P2A8	TPR_REGION domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.730
AB675_10013	AB675_4198	A0A0N1NY80	A0A0N0NL03	TPR_REGION domain-containing protein.	DNA-directed RNA polymerase II subunit RPB3.	0.731
AB675_10013	AB675_4211	A0A0N1NY80	A0A0N1H2G8	TPR_REGION domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.552
AB675_10781	AB675_10782	A0A0N0NMV4	A0A0N1H5C0	Putative RNA polymerase II transcription factor B subunit 1.	Putative RNA polymerase II transcription factor B subunit 1.	0.708
AB675_10781	AB675_10998	A0A0N0NMV4	A0A0N1H3M1	Putative RNA polymerase II transcription factor B subunit 1.	RNA polymerase II transcription factor B subunit 4.	0.963
AB675_10781	AB675_11664	A0A0N0NMV4	A0A0N0NI85	Putative RNA polymerase II transcription factor B subunit 1.	DNA-directed RNA polymerase II subunit RPB2.	0.849
AB675_10781	AB675_11665	A0A0N0NMV4	A0A0N1NVV2	Putative RNA polymerase II transcription factor B subunit 1.	DNA-directed RNA polymerase II subunit RPB2; Belongs to the RNA polymerase beta chain family.	0.849
AB675_10781	AB675_1574	A0A0N0NMV4	A0A0N1HKB5	Putative RNA polymerase II transcription factor B subunit 1.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.901
AB675_10781	AB675_2061	A0A0N0NMV4	A0A0N1HCW2	Putative RNA polymerase II transcription factor B subunit 1.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.901
AB675_10781	AB675_2304	A0A0N0NMV4	A0A0N1HAC6	Putative RNA polymerase II transcription factor B subunit 1.	Uncharacterized protein.	0.849
AB675_10781	AB675_2305	A0A0N0NMV4	A0A0N0NRW2	Putative RNA polymerase II transcription factor B subunit 1.	DNA-directed RNA polymerase II subunit rpb7.	0.900
AB675_10781	AB675_2361	A0A0N0NMV4	A0A0N1P2A8	Putative RNA polymerase II transcription factor B subunit 1.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.912
AB675_10781	AB675_280	A0A0N0NMV4	A0A0N1HBD9	Putative RNA polymerase II transcription factor B subunit 1.	RNA polymerase II transcription factor B subunit 3.	0.951
AB675_10781	AB675_3017	A0A0N0NMV4	A0A0N0NKM3	Putative RNA polymerase II transcription factor B subunit 1.	DNA repair helicase RAD25.	0.956
AB675_10781	AB675_3207	A0A0N0NMV4	A0A0N1H181	Putative RNA polymerase II transcription factor B subunit 1.	Transcription elongation factor spt5.	0.654
AB675_10781	AB675_3328	A0A0N0NMV4	A0A0N1H8G8	Putative RNA polymerase II transcription factor B subunit 1.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.654
AB675_10781	AB675_3956	A0A0N0NMV4	A0A0N0NK16	Putative RNA polymerase II transcription factor B subunit 1.	DNA-directed RNA polymerase II subunit RPB1.	0.886