32 items (Phialophora attae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AB675_10137	Methyltransf_25 domain-containing protein. (257 aa)
	AB675_886	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (132 aa)
	AB675_2361	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (154 aa)
	AB675_9074	Cyclin CCL1; Belongs to the cyclin family. (401 aa)
	AB675_3957	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1431 aa)
	AB675_11564	mRNA cap guanine-N7 methyltransferase. (579 aa)
	AB675_11665	DNA-directed RNA polymerase II subunit RPB2; Belongs to the RNA polymerase beta chain family. (724 aa)
	AB675_4933	Transcription initiation factor IIF subunit beta. (383 aa)
	AB675_1574	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (237 aa)
	AB675_2061	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (79 aa)
	AB675_476	Serine/threonine-protein kinase KIN28; Belongs to the protein kinase superfamily. (415 aa)
	AB675_280	RNA polymerase II transcription factor B subunit 3. (270 aa)
	AB675_2304	Uncharacterized protein. (519 aa)
	AB675_3328	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1064 aa)
	AB675_10782	Putative RNA polymerase II transcription factor B subunit 1. (452 aa)
	AB675_11351	mRNA-capping enzyme subunit alpha; Second step of mRNA capping. Transfer of the GMP moiety of GTP to the 5'-end of RNA via an enzyme-GMP covalent reaction intermediate; Belongs to the eukaryotic GTase family. (419 aa)
	AB675_10998	RNA polymerase II transcription factor B subunit 4. (445 aa)
	AB675_4211	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (144 aa)
	AB675_9928	DNA-directed RNA polymerase II subunit RPB11. (167 aa)
	AB675_3207	Transcription elongation factor spt5. (1377 aa)
	AB675_2305	DNA-directed RNA polymerase II subunit rpb7. (167 aa)
	AB675_8452	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (493 aa)
	AB675_9680	CFEM domain-containing protein. (332 aa)
	AB675_10781	Putative RNA polymerase II transcription factor B subunit 1. (158 aa)
	AB675_7454	DNA repair helicase rad15. (778 aa)
	AB675_4601	mRNA cap guanine-N7 methyltransferase. (288 aa)
	AB675_4198	DNA-directed RNA polymerase II subunit RPB3. (199 aa)
	AB675_3017	DNA repair helicase RAD25. (838 aa)
	AB675_3956	DNA-directed RNA polymerase II subunit RPB1. (304 aa)
	AB675_8947	RPOL4c domain-containing protein. (156 aa)
	AB675_11664	DNA-directed RNA polymerase II subunit RPB2. (445 aa)
	AB675_4845	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (667 aa)

Your Current Organism:

Phialophora attae

NCBI taxonomy Id: 1664694
Other names: CBS 131958, P. attae, Phialophora attae Attili-Angelis, Duarte, Stielow & de Hoog, 2014

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AB675_10137	AB675_10998	A0A0N1NW09	A0A0N1H3M1	Methyltransf_25 domain-containing protein.	RNA polymerase II transcription factor B subunit 4.	0.669
AB675_10137	AB675_11351	A0A0N1NW09	A0A0N1H433	Methyltransf_25 domain-containing protein.	mRNA-capping enzyme subunit alpha; Second step of mRNA capping. Transfer of the GMP moiety of GTP to the 5'-end of RNA via an enzyme-GMP covalent reaction intermediate; Belongs to the eukaryotic GTase family.	0.741
AB675_10137	AB675_11664	A0A0N1NW09	A0A0N0NI85	Methyltransf_25 domain-containing protein.	DNA-directed RNA polymerase II subunit RPB2.	0.681
AB675_10137	AB675_11665	A0A0N1NW09	A0A0N1NVV2	Methyltransf_25 domain-containing protein.	DNA-directed RNA polymerase II subunit RPB2; Belongs to the RNA polymerase beta chain family.	0.681
AB675_10137	AB675_1574	A0A0N1NW09	A0A0N1HKB5	Methyltransf_25 domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.593
AB675_10137	AB675_2304	A0A0N1NW09	A0A0N1HAC6	Methyltransf_25 domain-containing protein.	Uncharacterized protein.	0.566
AB675_10137	AB675_2305	A0A0N1NW09	A0A0N0NRW2	Methyltransf_25 domain-containing protein.	DNA-directed RNA polymerase II subunit rpb7.	0.566
AB675_10137	AB675_3207	A0A0N1NW09	A0A0N1H181	Methyltransf_25 domain-containing protein.	Transcription elongation factor spt5.	0.695
AB675_10137	AB675_3328	A0A0N1NW09	A0A0N1H8G8	Methyltransf_25 domain-containing protein.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.695
AB675_10137	AB675_3956	A0A0N1NW09	A0A0N0NK16	Methyltransf_25 domain-containing protein.	DNA-directed RNA polymerase II subunit RPB1.	0.441
AB675_10137	AB675_3957	A0A0N1NW09	A0A0N1NYV5	Methyltransf_25 domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.441
AB675_10137	AB675_4198	A0A0N1NW09	A0A0N0NL03	Methyltransf_25 domain-containing protein.	DNA-directed RNA polymerase II subunit RPB3.	0.662
AB675_10137	AB675_4211	A0A0N1NW09	A0A0N1H2G8	Methyltransf_25 domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.615
AB675_10137	AB675_476	A0A0N1NW09	A0A0N1HBE6	Methyltransf_25 domain-containing protein.	Serine/threonine-protein kinase KIN28; Belongs to the protein kinase superfamily.	0.588
AB675_10137	AB675_4933	A0A0N1NW09	A0A0N1NVP3	Methyltransf_25 domain-containing protein.	Transcription initiation factor IIF subunit beta.	0.594
AB675_10137	AB675_886	A0A0N1NW09	A0A0N1P4A1	Methyltransf_25 domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.592
AB675_10137	AB675_9074	A0A0N1NW09	A0A0N1P154	Methyltransf_25 domain-containing protein.	Cyclin CCL1; Belongs to the cyclin family.	0.602
AB675_10137	AB675_9680	A0A0N1NW09	A0A0N0NPH2	Methyltransf_25 domain-containing protein.	CFEM domain-containing protein.	0.695
AB675_10781	AB675_10782	A0A0N0NMV4	A0A0N1H5C0	Putative RNA polymerase II transcription factor B subunit 1.	Putative RNA polymerase II transcription factor B subunit 1.	0.708
AB675_10781	AB675_10998	A0A0N0NMV4	A0A0N1H3M1	Putative RNA polymerase II transcription factor B subunit 1.	RNA polymerase II transcription factor B subunit 4.	0.963