(8 nodes) Mixed, incl. STAS domain, and tRNA-binding domain network (Mesorhizobium oceanicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APH73106.1	Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	APH73107.1	Sodium-independent anion transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (495 aa)
	APH73108.1	tRNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)
	APH73109.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (166 aa)
	lgt	Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. (293 aa)
	APH73111.1	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)
	APH73112.1	Polyphenol oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the multicopper oxidase YfiH/RL5 family. (263 aa)
	APH73113.1	Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)

Your Current Organism:

Mesorhizobium oceanicum

NCBI taxonomy Id: 1670800
Other names: KCTC 42783, M. oceanicum, MCCC 1K02305, Mesorhizobium oceanicum Fu et al. 2017, Mesorhizobium sp. B7, strain B7

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APH73106.1	APH73107.1	BSQ44_18325	BSQ44_18330	Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium-independent anion transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
APH73106.1	APH73108.1	BSQ44_18325	BSQ44_18335	Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology.	tRNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
APH73106.1	APH73109.1	BSQ44_18325	BSQ44_18340	Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
APH73107.1	APH73106.1	BSQ44_18330	BSQ44_18325	Sodium-independent anion transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
APH73107.1	APH73108.1	BSQ44_18330	BSQ44_18335	Sodium-independent anion transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	tRNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
APH73107.1	APH73109.1	BSQ44_18330	BSQ44_18340	Sodium-independent anion transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
APH73108.1	APH73106.1	BSQ44_18335	BSQ44_18325	tRNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
APH73108.1	APH73107.1	BSQ44_18335	BSQ44_18330	tRNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium-independent anion transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
APH73108.1	APH73109.1	BSQ44_18335	BSQ44_18340	tRNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
APH73108.1	APH73112.1	BSQ44_18335	BSQ44_18360	tRNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyphenol oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the multicopper oxidase YfiH/RL5 family.	0.450
APH73109.1	APH73106.1	BSQ44_18340	BSQ44_18325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
APH73109.1	APH73107.1	BSQ44_18340	BSQ44_18330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium-independent anion transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
APH73109.1	APH73108.1	BSQ44_18340	BSQ44_18335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	tRNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
APH73111.1	APH73112.1	BSQ44_18355	BSQ44_18360	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyphenol oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the multicopper oxidase YfiH/RL5 family.	0.636
APH73111.1	APH73113.1	BSQ44_18355	BSQ44_18365	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
APH73111.1	lgt	BSQ44_18355	BSQ44_18350	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.	0.829
APH73112.1	APH73108.1	BSQ44_18360	BSQ44_18335	Polyphenol oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the multicopper oxidase YfiH/RL5 family.	tRNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
APH73112.1	APH73111.1	BSQ44_18360	BSQ44_18355	Polyphenol oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the multicopper oxidase YfiH/RL5 family.	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
APH73112.1	APH73113.1	BSQ44_18360	BSQ44_18365	Polyphenol oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the multicopper oxidase YfiH/RL5 family.	Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
APH73112.1	lgt	BSQ44_18360	BSQ44_18350	Polyphenol oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the multicopper oxidase YfiH/RL5 family.	Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.	0.699