(12 nodes) Mixed, incl. TadE-like, and Pilus formation protein, N-terminal network (Mesorhizobium oceanicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APH70385.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)
	APH70386.1	Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)
	APH74357.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (133 aa)
	APH70387.1	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (57 aa)
	APH74358.1	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (173 aa)
	APH70388.1	Flp pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
	APH70389.1	Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family. (516 aa)
	APH70390.1	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
	APH70391.1	CtpF protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
	APH70392.1	Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (492 aa)
	APH70393.1	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
	APH70394.1	Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)

Your Current Organism:

Mesorhizobium oceanicum

NCBI taxonomy Id: 1670800
Other names: KCTC 42783, M. oceanicum, MCCC 1K02305, Mesorhizobium oceanicum Fu et al. 2017, Mesorhizobium sp. B7, strain B7

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APH70385.1	APH70386.1	BSQ44_02560	BSQ44_02565	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
APH70385.1	APH70387.1	BSQ44_02560	BSQ44_02575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
APH70385.1	APH70388.1	BSQ44_02560	BSQ44_02585	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flp pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
APH70385.1	APH70389.1	BSQ44_02560	BSQ44_02590	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	0.778
APH70385.1	APH70390.1	BSQ44_02560	BSQ44_02595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
APH70385.1	APH70391.1	BSQ44_02560	BSQ44_02600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CtpF protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883
APH70385.1	APH70392.1	BSQ44_02560	BSQ44_02605	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
APH70385.1	APH70393.1	BSQ44_02560	BSQ44_02610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
APH70385.1	APH70394.1	BSQ44_02560	BSQ44_02615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
APH70385.1	APH74357.1	BSQ44_02560	BSQ44_02570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
APH70385.1	APH74358.1	BSQ44_02560	BSQ44_02580	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
APH70386.1	APH70385.1	BSQ44_02565	BSQ44_02560	Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
APH70386.1	APH70387.1	BSQ44_02565	BSQ44_02575	Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
APH70386.1	APH70388.1	BSQ44_02565	BSQ44_02585	Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flp pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
APH70386.1	APH70389.1	BSQ44_02565	BSQ44_02590	Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	0.828
APH70386.1	APH70390.1	BSQ44_02565	BSQ44_02595	Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
APH70386.1	APH70391.1	BSQ44_02565	BSQ44_02600	Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.	CtpF protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
APH70386.1	APH70392.1	BSQ44_02565	BSQ44_02605	Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.712
APH70386.1	APH70393.1	BSQ44_02565	BSQ44_02610	Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.885
APH70386.1	APH70394.1	BSQ44_02565	BSQ44_02615	Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812