(11 nodes) Supramolecular complex, and Protein of unknown function DUF2442 network (Mesorhizobium oceanicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APH74337.1	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (127 aa)
	APH70380.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (96 aa)
	APH70381.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
	APH70383.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (91 aa)
	BSQ44_02555	Hypothetical protein; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)
	APH71106.1	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)
	APH71709.1	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)
	APH72018.1	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	APH72188.1	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)
	APH74596.1	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)
	APH73526.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)

Your Current Organism:

Mesorhizobium oceanicum

NCBI taxonomy Id: 1670800
Other names: KCTC 42783, M. oceanicum, MCCC 1K02305, Mesorhizobium oceanicum Fu et al. 2017, Mesorhizobium sp. B7, strain B7

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APH70380.1	APH70381.1	BSQ44_02530	BSQ44_02535	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
APH70381.1	APH70380.1	BSQ44_02535	BSQ44_02530	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.497
APH70381.1	APH70383.1	BSQ44_02535	BSQ44_02545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
APH70383.1	APH70381.1	BSQ44_02545	BSQ44_02535	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
APH70383.1	BSQ44_02555	BSQ44_02545	BSQ44_02555	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443
APH71106.1	APH72018.1	BSQ44_06780	BSQ44_12065	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.712
APH71709.1	APH74337.1	BSQ44_10275	BSQ44_01675	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
APH71709.1	APH74596.1	BSQ44_10275	BSQ44_13705	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.666
APH72018.1	APH71106.1	BSQ44_12065	BSQ44_06780	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.712
APH72018.1	APH74337.1	BSQ44_12065	BSQ44_01675	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.698
APH72018.1	APH74596.1	BSQ44_12065	BSQ44_13705	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
APH72188.1	APH73526.1	BSQ44_13055	BSQ44_20745	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
APH72188.1	APH74337.1	BSQ44_13055	BSQ44_01675	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
APH72188.1	APH74596.1	BSQ44_13055	BSQ44_13705	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
APH73526.1	APH72188.1	BSQ44_20745	BSQ44_13055	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
APH74337.1	APH71709.1	BSQ44_01675	BSQ44_10275	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
APH74337.1	APH72018.1	BSQ44_01675	BSQ44_12065	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.698
APH74337.1	APH72188.1	BSQ44_01675	BSQ44_13055	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
APH74337.1	APH74596.1	BSQ44_01675	BSQ44_13705	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.708
APH74596.1	APH71709.1	BSQ44_13705	BSQ44_10275	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.666