(36 nodes) Mixed, incl. Periplasmic binding protein domain, and Pentose transmembrane transport network (Mesorhizobium oceanicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APH70109.1	Aldehyde dehydrogenase (NADP(+)); Derived by automated computational analysis using gene prediction method: Protein Homology. (508 aa)
	APH70112.1	GguC protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	APH70113.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (413 aa)
	APH74324.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (507 aa)
	APH70114.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)
	APH70116.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
	APH70117.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (508 aa)
	APH70118.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (341 aa)
	APH70119.1	Sugar ABC transporter permease YjfF; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (326 aa)
	APH74407.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (331 aa)
	APH70769.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	APH70770.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (710 aa)
	APH70771.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (347 aa)
	APH70772.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (501 aa)
	APH74444.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (324 aa)
	APH71015.1	D-xylose ABC transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology. (504 aa)
	APH71016.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
	APH74445.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	APH71018.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
	APH71019.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (340 aa)
	APH71296.1	Ribose ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
	APH71297.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (503 aa)
	APH71298.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (346 aa)
	APH71299.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (316 aa)
	APH71300.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
	rbsA	D-xylose ABC transporter ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (510 aa)
	APH74471.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (314 aa)
	APH72910.1	VapC toxin family PIN domain ribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
	APH72911.1	Histidinol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (81 aa)
	APH72912.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	APH74663.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (337 aa)
	APH72913.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (503 aa)
	mtnK	S-methyl-5-thioribose kinase; Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate. (428 aa)
	mtnA	S-methyl-5-thioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). (368 aa)
	APH72916.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (116 aa)
	APH74664.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (151 aa)

Your Current Organism:

Mesorhizobium oceanicum

NCBI taxonomy Id: 1670800
Other names: KCTC 42783, M. oceanicum, MCCC 1K02305, Mesorhizobium oceanicum Fu et al. 2017, Mesorhizobium sp. B7, strain B7

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APH70109.1	APH70112.1	BSQ44_00965	BSQ44_00980	Aldehyde dehydrogenase (NADP(+)); Derived by automated computational analysis using gene prediction method: Protein Homology.	GguC protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
APH70109.1	APH70113.1	BSQ44_00965	BSQ44_00985	Aldehyde dehydrogenase (NADP(+)); Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.687
APH70109.1	APH70114.1	BSQ44_00965	BSQ44_00995	Aldehyde dehydrogenase (NADP(+)); Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
APH70109.1	APH74324.1	BSQ44_00965	BSQ44_00990	Aldehyde dehydrogenase (NADP(+)); Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.666
APH70112.1	APH70109.1	BSQ44_00980	BSQ44_00965	GguC protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde dehydrogenase (NADP(+)); Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
APH70112.1	APH70113.1	BSQ44_00980	BSQ44_00985	GguC protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.801
APH70112.1	APH70114.1	BSQ44_00980	BSQ44_00995	GguC protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.660
APH70112.1	APH74324.1	BSQ44_00980	BSQ44_00990	GguC protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
APH70113.1	APH70109.1	BSQ44_00985	BSQ44_00965	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Aldehyde dehydrogenase (NADP(+)); Derived by automated computational analysis using gene prediction method: Protein Homology.	0.687
APH70113.1	APH70112.1	BSQ44_00985	BSQ44_00980	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	GguC protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.801
APH70113.1	APH70114.1	BSQ44_00985	BSQ44_00995	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
APH70113.1	APH70116.1	BSQ44_00985	BSQ44_01005	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.826
APH70113.1	APH70117.1	BSQ44_00985	BSQ44_01010	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.794
APH70113.1	APH70118.1	BSQ44_00985	BSQ44_01015	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.467
APH70113.1	APH70119.1	BSQ44_00985	BSQ44_01020	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter permease YjfF; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.457
APH70113.1	APH70772.1	BSQ44_00985	BSQ44_04770	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
APH70113.1	APH71015.1	BSQ44_00985	BSQ44_06225	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	D-xylose ABC transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
APH70113.1	APH71016.1	BSQ44_00985	BSQ44_06230	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.403
APH70113.1	APH71018.1	BSQ44_00985	BSQ44_06245	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
APH70113.1	APH71297.1	BSQ44_00985	BSQ44_07865	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410