(46 nodes) Mixed, incl. ATP-binding cassette (ABC) transporter complex, and Ferric-uptake regulator network (Mesorhizobium oceanicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APH70048.1	Pseudoazurin; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)
	APH74317.1	Basic amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
	APH70050.1	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	APH70051.1	SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)
	APH70052.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (97 aa)
	APH70053.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
	fur	Transcriptional repressor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family. (139 aa)
	APH71087.1	Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	fur-2	Transcriptional repressor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family. (130 aa)
	APH71620.1	Acetylpolyamine amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
	APH71621.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (166 aa)
	APH71622.1	3-keto-5-aminohexanoate cleavage protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	APH74517.1	Aspartate aminotransferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (454 aa)
	APH71623.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (544 aa)
	APH71624.1	Polar amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	APH71625.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	APH71626.1	Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	APH71627.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	APH71628.1	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (319 aa)
	APH72051.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	APH72052.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)
	APH74569.1	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (263 aa)
	APH72145.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (113 aa)
	APH72146.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	APH72147.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	BSQ44_12830	Manganese/iron transporter ATP-binding protein; With SitACD is involved in the transport of manganese and iron; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family. (296 aa)
	fur-3	Transcriptional repressor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family. (143 aa)
	APH72150.1	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	APH72223.1	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	APH72224.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	BSQ44_13655	BA14K family protein; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)
	APH74615.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family. (331 aa)
	APH72679.1	Histidine/lysine/arginine/ornithine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
	APH72680.1	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	APH72681.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	APH72682.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
	APH72850.1	Urease-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
	APH72851.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	APH72852.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
	APH72853.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
	APH72854.1	Amino acid ABC transporter substrate-bindnig protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (343 aa)
	APH74728.1	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	APH73980.1	GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)
	APH74788.1	D-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S11 family. (371 aa)
	APH74789.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
	APH73981.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)

Your Current Organism:

Mesorhizobium oceanicum

NCBI taxonomy Id: 1670800
Other names: KCTC 42783, M. oceanicum, MCCC 1K02305, Mesorhizobium oceanicum Fu et al. 2017, Mesorhizobium sp. B7, strain B7

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APH70050.1	APH70051.1	BSQ44_00640	BSQ44_00645	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.797
APH70050.1	APH70052.1	BSQ44_00640	BSQ44_00650	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.509
APH70050.1	APH70053.1	BSQ44_00640	BSQ44_00655	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
APH70050.1	APH71624.1	BSQ44_00640	BSQ44_09785	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polar amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
APH70050.1	APH71625.1	BSQ44_00640	BSQ44_09790	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.487
APH70050.1	APH71626.1	BSQ44_00640	BSQ44_09795	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
APH70050.1	APH71627.1	BSQ44_00640	BSQ44_09800	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
APH70050.1	APH72051.1	BSQ44_00640	BSQ44_12270	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
APH70050.1	APH72052.1	BSQ44_00640	BSQ44_12275	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
APH70050.1	APH72146.1	BSQ44_00640	BSQ44_12815	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
APH70050.1	APH72147.1	BSQ44_00640	BSQ44_12820	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
APH70050.1	APH72223.1	BSQ44_00640	BSQ44_13265	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
APH70050.1	APH72679.1	BSQ44_00640	BSQ44_15920	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine/lysine/arginine/ornithine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
APH70050.1	APH72680.1	BSQ44_00640	BSQ44_15925	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.865
APH70050.1	APH72681.1	BSQ44_00640	BSQ44_15930	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
APH70050.1	APH72682.1	BSQ44_00640	BSQ44_15935	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.524
APH70050.1	APH72851.1	BSQ44_00640	BSQ44_16855	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
APH70050.1	APH72852.1	BSQ44_00640	BSQ44_16860	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
APH70050.1	APH72853.1	BSQ44_00640	BSQ44_16865	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
APH70050.1	APH72854.1	BSQ44_00640	BSQ44_16870	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-bindnig protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	0.556