(54 nodes) Mixed, incl. TRAP transporter solute receptor DctP, and TRAP transporter large membrane protein DctM network (Mesorhizobium oceanicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APH70146.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)
	BSQ44_01180	Hypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (432 aa)
	APH70301.1	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	APH70482.1	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	APH70483.1	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
	APH70484.1	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	APH70671.1	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (439 aa)
	APH70672.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)
	APH70673.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)
	APH71567.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
	APH71568.1	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	APH71569.1	TRAP transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa)
	APH71570.1	Microcystin LR degradation protein MlrC-like protein; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family. (484 aa)
	APH71571.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
	APH71572.1	Ornithine cyclodeaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
	APH71579.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (166 aa)
	APH71580.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)
	APH71581.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
	APH71643.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
	APH71644.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
	APH71645.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)
	APH71646.1	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)
	APH71657.1	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)
	APH71658.1	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (432 aa)
	APH74531.1	Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (383 aa)
	APH72513.1	Alanine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AlaDH/PNT family. (372 aa)
	APH73060.1	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	APH74684.1	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	APH73061.1	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)
	APH73200.1	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)
	APH73201.1	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)
	APH73202.1	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)
	APH73246.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
	APH73247.1	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
	APH73248.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	APH73376.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
	APH74717.1	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	APH73377.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)
	APH73378.1	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)
	APH73379.1	Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	APH73380.1	3-keto-5-aminohexanoate cleavage protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	APH73381.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	APH73382.1	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	APH73482.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (276 aa)
	APH73483.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)
	APH73484.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa)
	APH73485.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)
	APH73488.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	APH73489.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
	APH73490.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (274 aa)
	APH73491.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (570 aa)
	APH73492.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)
	APH73493.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)
	APH73494.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)

Your Current Organism:

Mesorhizobium oceanicum

NCBI taxonomy Id: 1670800
Other names: KCTC 42783, M. oceanicum, MCCC 1K02305, Mesorhizobium oceanicum Fu et al. 2017, Mesorhizobium sp. B7, strain B7

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APH70146.1	APH70671.1	BSQ44_01170	BSQ44_04170	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
APH70146.1	APH71579.1	BSQ44_01170	BSQ44_09490	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
APH70146.1	APH71580.1	BSQ44_01170	BSQ44_09495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
APH70146.1	APH71646.1	BSQ44_01170	BSQ44_09915	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
APH70146.1	APH71658.1	BSQ44_01170	BSQ44_09980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.589
APH70146.1	APH73200.1	BSQ44_01170	BSQ44_18865	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
APH70146.1	APH73201.1	BSQ44_01170	BSQ44_18870	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.556
APH70146.1	APH73247.1	BSQ44_01170	BSQ44_19110	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
APH70146.1	APH73483.1	BSQ44_01170	BSQ44_20490	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.534
APH70146.1	APH73484.1	BSQ44_01170	BSQ44_20495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.523
APH70146.1	BSQ44_01180	BSQ44_01170	BSQ44_01180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.706
APH70301.1	APH70671.1	BSQ44_02055	BSQ44_04170	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.477
APH70301.1	APH70673.1	BSQ44_02055	BSQ44_04180	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.643
APH70301.1	APH71579.1	BSQ44_02055	BSQ44_09490	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.579
APH70301.1	APH71580.1	BSQ44_02055	BSQ44_09495	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
APH70301.1	APH71644.1	BSQ44_02055	BSQ44_09905	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
APH70301.1	APH71646.1	BSQ44_02055	BSQ44_09915	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443
APH70301.1	APH71658.1	BSQ44_02055	BSQ44_09980	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
APH70301.1	APH73200.1	BSQ44_02055	BSQ44_18865	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.790
APH70301.1	APH73201.1	BSQ44_02055	BSQ44_18870	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822