(6 nodes) TRAP transporter solute receptor, DctP family, and C4-dicarboxylate transport network (Mesorhizobium oceanicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APH70482.1	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	APH70483.1	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
	APH70484.1	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	APH73246.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
	APH73247.1	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
	APH73248.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)

Your Current Organism:

Mesorhizobium oceanicum

NCBI taxonomy Id: 1670800
Other names: KCTC 42783, M. oceanicum, MCCC 1K02305, Mesorhizobium oceanicum Fu et al. 2017, Mesorhizobium sp. B7, strain B7

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APH70482.1	APH70483.1	BSQ44_03100	BSQ44_03105	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
APH70482.1	APH70484.1	BSQ44_03100	BSQ44_03110	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
APH70482.1	APH73247.1	BSQ44_03100	BSQ44_19110	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
APH70482.1	APH73248.1	BSQ44_03100	BSQ44_19115	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.755
APH70483.1	APH70482.1	BSQ44_03105	BSQ44_03100	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
APH70483.1	APH70484.1	BSQ44_03105	BSQ44_03110	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
APH70483.1	APH73246.1	BSQ44_03105	BSQ44_19105	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
APH70483.1	APH73248.1	BSQ44_03105	BSQ44_19115	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
APH70484.1	APH70482.1	BSQ44_03110	BSQ44_03100	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
APH70484.1	APH70483.1	BSQ44_03110	BSQ44_03105	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
APH70484.1	APH73246.1	BSQ44_03110	BSQ44_19105	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
APH70484.1	APH73247.1	BSQ44_03110	BSQ44_19110	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
APH73246.1	APH70483.1	BSQ44_19105	BSQ44_03105	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
APH73246.1	APH70484.1	BSQ44_19105	BSQ44_03110	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
APH73246.1	APH73247.1	BSQ44_19105	BSQ44_19110	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
APH73246.1	APH73248.1	BSQ44_19105	BSQ44_19115	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
APH73247.1	APH70482.1	BSQ44_19110	BSQ44_03100	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
APH73247.1	APH70484.1	BSQ44_19110	BSQ44_03110	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
APH73247.1	APH73246.1	BSQ44_19110	BSQ44_19105	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
APH73247.1	APH73248.1	BSQ44_19110	BSQ44_19115	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929