(12 nodes) Mixed, incl. Bacterial regulatory proteins, gntR family, and Pyridine nucleotide-disulphide oxidoreductase network (Mesorhizobium oceanicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APH70206.1	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)
	APH70207.1	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)
	APH70208.1	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
	APH70209.1	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	APH70210.1	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	APH71322.1	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
	APH71323.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)
	APH71324.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	APH71325.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (554 aa)
	APH71326.1	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	APH74476.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
	APH71327.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (412 aa)

Your Current Organism:

Mesorhizobium oceanicum

NCBI taxonomy Id: 1670800
Other names: KCTC 42783, M. oceanicum, MCCC 1K02305, Mesorhizobium oceanicum Fu et al. 2017, Mesorhizobium sp. B7, strain B7

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APH70206.1	APH70207.1	BSQ44_01525	BSQ44_01530	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
APH70206.1	APH70208.1	BSQ44_01525	BSQ44_01535	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
APH70206.1	APH70209.1	BSQ44_01525	BSQ44_01540	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
APH70206.1	APH70210.1	BSQ44_01525	BSQ44_01545	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
APH70206.1	APH71324.1	BSQ44_01525	BSQ44_08030	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.706
APH70207.1	APH70206.1	BSQ44_01530	BSQ44_01525	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
APH70207.1	APH70208.1	BSQ44_01530	BSQ44_01535	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
APH70207.1	APH70209.1	BSQ44_01530	BSQ44_01540	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.788
APH70207.1	APH70210.1	BSQ44_01530	BSQ44_01545	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
APH70207.1	APH71323.1	BSQ44_01530	BSQ44_08025	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
APH70208.1	APH70206.1	BSQ44_01535	BSQ44_01525	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
APH70208.1	APH70207.1	BSQ44_01535	BSQ44_01530	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
APH70208.1	APH70209.1	BSQ44_01535	BSQ44_01540	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
APH70208.1	APH70210.1	BSQ44_01535	BSQ44_01545	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
APH70208.1	APH71322.1	BSQ44_01535	BSQ44_08020	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
APH70208.1	APH71324.1	BSQ44_01535	BSQ44_08030	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.513
APH70209.1	APH70206.1	BSQ44_01540	BSQ44_01525	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
APH70209.1	APH70207.1	BSQ44_01540	BSQ44_01530	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.788
APH70209.1	APH70208.1	BSQ44_01540	BSQ44_01535	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
APH70209.1	APH70210.1	BSQ44_01540	BSQ44_01545	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780