(6 nodes) Mixed, incl. Shikimate kinase, and 4Fe-4S dicluster domain network (Mesorhizobium oceanicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	aroK	Transcriptional regulator; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. (305 aa)
	APH73053.1	benzoyl-CoA oxygenase/reductase, BoxA protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	APH73055.1	benzoyl-CoA oxygenase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)
	APH74683.1	benzoyl-CoA-dihydrodiol lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (561 aa)
	APH73056.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)
	APH73057.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)

Your Current Organism:

Mesorhizobium oceanicum

NCBI taxonomy Id: 1670800
Other names: KCTC 42783, M. oceanicum, MCCC 1K02305, Mesorhizobium oceanicum Fu et al. 2017, Mesorhizobium sp. B7, strain B7

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APH73053.1	APH73055.1	BSQ44_18020	BSQ44_18030	benzoyl-CoA oxygenase/reductase, BoxA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	benzoyl-CoA oxygenase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
APH73053.1	APH73056.1	BSQ44_18020	BSQ44_18040	benzoyl-CoA oxygenase/reductase, BoxA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
APH73053.1	APH73057.1	BSQ44_18020	BSQ44_18045	benzoyl-CoA oxygenase/reductase, BoxA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
APH73053.1	APH74683.1	BSQ44_18020	BSQ44_18035	benzoyl-CoA oxygenase/reductase, BoxA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	benzoyl-CoA-dihydrodiol lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
APH73053.1	aroK	BSQ44_18020	BSQ44_18015	benzoyl-CoA oxygenase/reductase, BoxA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.	0.924
APH73055.1	APH73053.1	BSQ44_18030	BSQ44_18020	benzoyl-CoA oxygenase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	benzoyl-CoA oxygenase/reductase, BoxA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
APH73055.1	APH73056.1	BSQ44_18030	BSQ44_18040	benzoyl-CoA oxygenase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.830
APH73055.1	APH73057.1	BSQ44_18030	BSQ44_18045	benzoyl-CoA oxygenase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
APH73055.1	APH74683.1	BSQ44_18030	BSQ44_18035	benzoyl-CoA oxygenase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	benzoyl-CoA-dihydrodiol lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
APH73055.1	aroK	BSQ44_18030	BSQ44_18015	benzoyl-CoA oxygenase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.	0.908
APH73056.1	APH73053.1	BSQ44_18040	BSQ44_18020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	benzoyl-CoA oxygenase/reductase, BoxA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
APH73056.1	APH73055.1	BSQ44_18040	BSQ44_18030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	benzoyl-CoA oxygenase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.830
APH73056.1	APH73057.1	BSQ44_18040	BSQ44_18045	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
APH73056.1	APH74683.1	BSQ44_18040	BSQ44_18035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	benzoyl-CoA-dihydrodiol lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
APH73056.1	aroK	BSQ44_18040	BSQ44_18015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.	0.818
APH73057.1	APH73053.1	BSQ44_18045	BSQ44_18020	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	benzoyl-CoA oxygenase/reductase, BoxA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
APH73057.1	APH73055.1	BSQ44_18045	BSQ44_18030	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	benzoyl-CoA oxygenase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
APH73057.1	APH73056.1	BSQ44_18045	BSQ44_18040	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
APH73057.1	APH74683.1	BSQ44_18045	BSQ44_18035	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	benzoyl-CoA-dihydrodiol lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.898
APH73057.1	aroK	BSQ44_18045	BSQ44_18015	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.	0.837