(12 nodes) Mixed, incl. Branched-chain amino acid transmembrane transporter activity, and Branched-chain amino acid ATP-binding cassette transporter network (Mesorhizobium oceanicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APH71350.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (393 aa)
	APH71351.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (507 aa)
	APH74482.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (274 aa)
	APH71352.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (347 aa)
	APH71632.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (326 aa)
	APH71633.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (289 aa)
	APH71634.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
	APH71635.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
	APH71683.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)
	APH71684.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
	APH71685.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (288 aa)
	APH71686.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (326 aa)

Your Current Organism:

Mesorhizobium oceanicum

NCBI taxonomy Id: 1670800
Other names: KCTC 42783, M. oceanicum, MCCC 1K02305, Mesorhizobium oceanicum Fu et al. 2017, Mesorhizobium sp. B7, strain B7

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APH71350.1	APH71351.1	BSQ44_08190	BSQ44_08195	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
APH71350.1	APH71352.1	BSQ44_08190	BSQ44_08205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.932
APH71350.1	APH71632.1	BSQ44_08190	BSQ44_09830	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.802
APH71350.1	APH71633.1	BSQ44_08190	BSQ44_09835	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.827
APH71350.1	APH71634.1	BSQ44_08190	BSQ44_09840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
APH71350.1	APH71635.1	BSQ44_08190	BSQ44_09845	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
APH71350.1	APH71683.1	BSQ44_08190	BSQ44_10125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
APH71350.1	APH71685.1	BSQ44_08190	BSQ44_10135	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.666
APH71350.1	APH71686.1	BSQ44_08190	BSQ44_10140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.702
APH71350.1	APH74482.1	BSQ44_08190	BSQ44_08200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.916
APH71351.1	APH71350.1	BSQ44_08195	BSQ44_08190	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
APH71351.1	APH71352.1	BSQ44_08195	BSQ44_08205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.895
APH71351.1	APH71632.1	BSQ44_08195	BSQ44_09830	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.767
APH71351.1	APH71633.1	BSQ44_08195	BSQ44_09835	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.978
APH71351.1	APH71634.1	BSQ44_08195	BSQ44_09840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.642
APH71351.1	APH71635.1	BSQ44_08195	BSQ44_09845	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.662
APH71351.1	APH71683.1	BSQ44_08195	BSQ44_10125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
APH71351.1	APH71684.1	BSQ44_08195	BSQ44_10130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
APH71351.1	APH71685.1	BSQ44_08195	BSQ44_10135	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.837
APH71351.1	APH71686.1	BSQ44_08195	BSQ44_10140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.736