(25 nodes) Leucine-binding protein domain network (Mesorhizobium oceanicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APH72544.1	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)
	APH70012.1	Branched chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
	APH70695.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
	APH70764.1	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
	APH70903.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
	APH71271.1	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)
	APH71282.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (393 aa)
	APH71289.1	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
	APH71312.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
	APH74477.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (418 aa)
	APH74481.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
	APH71350.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (393 aa)
	APH71591.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)
	APH71636.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (416 aa)
	APH71684.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
	APH71880.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	APH72007.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
	APH74584.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	APH72381.1	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)
	APH72418.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)
	APH73140.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)
	APH73285.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
	APH74734.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
	APH74762.1	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
	APH73814.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)

Your Current Organism:

Mesorhizobium oceanicum

NCBI taxonomy Id: 1670800
Other names: KCTC 42783, M. oceanicum, MCCC 1K02305, Mesorhizobium oceanicum Fu et al. 2017, Mesorhizobium sp. B7, strain B7

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APH70695.1	APH70764.1	BSQ44_04300	BSQ44_04725	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
APH70695.1	APH70903.1	BSQ44_04300	BSQ44_05555	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
APH70764.1	APH70695.1	BSQ44_04725	BSQ44_04300	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
APH70764.1	APH71636.1	BSQ44_04725	BSQ44_09850	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
APH70764.1	APH71880.1	BSQ44_04725	BSQ44_11260	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
APH70764.1	APH74762.1	BSQ44_04725	BSQ44_22190	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.577
APH70903.1	APH70695.1	BSQ44_05555	BSQ44_04300	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
APH70903.1	APH74762.1	BSQ44_05555	BSQ44_22190	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.635
APH71350.1	APH71636.1	BSQ44_08190	BSQ44_09850	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
APH71350.1	APH73140.1	BSQ44_08190	BSQ44_18530	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
APH71350.1	APH74477.1	BSQ44_08190	BSQ44_08060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473
APH71350.1	APH74481.1	BSQ44_08190	BSQ44_08140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.537
APH71636.1	APH70764.1	BSQ44_09850	BSQ44_04725	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
APH71636.1	APH71350.1	BSQ44_09850	BSQ44_08190	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
APH71636.1	APH74477.1	BSQ44_09850	BSQ44_08060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
APH71636.1	APH74734.1	BSQ44_09850	BSQ44_20610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
APH71684.1	APH73140.1	BSQ44_10130	BSQ44_18530	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
APH71880.1	APH70764.1	BSQ44_11260	BSQ44_04725	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
APH73140.1	APH71350.1	BSQ44_18530	BSQ44_08190	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
APH73140.1	APH71684.1	BSQ44_18530	BSQ44_10130	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480