(10 nodes) Mixed, incl. Intramolecular oxidoreductase activity, transposing C=C bonds, and Xenobiotic catabolic process network (Pseudomonas sp. KG01)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KMT54640.1	5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)
	KMT54654.1	Homoprotocatechuate degradative operon repressor; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
	KMT54656.1	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	KMT54657.1	4-hydroxyphenylacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	KMT54658.1	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	KMT54659.1	Betaine-aldehyde dehydrogenase; Catalyzes the formation of betaine from betaine aldehyde; Derived by automated computational analysis using gene prediction method: Protein Homology. (486 aa)
	KMT54660.1	3,4-dihydroxyphenylacetate 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	KMT54661.1	5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)
	KMT54663.1	2-oxo-hepta-3-ene-1,7-dioate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	KMT54664.1	Catalyzes the retro-aldol cleavage of 2-keto-3-deoxy-L-rhamnonate to pyruvate and lactaldehyde; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family. (267 aa)

Your Current Organism:

Pseudomonas sp. KG01

NCBI taxonomy Id: 1674920
Other names: P. sp. KG01

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KMT54640.1	KMT54656.1	ACR52_15875	ACR52_15960	5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
KMT54640.1	KMT54657.1	ACR52_15875	ACR52_15965	5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxyphenylacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
KMT54640.1	KMT54658.1	ACR52_15875	ACR52_15970	5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
KMT54640.1	KMT54660.1	ACR52_15875	ACR52_15980	5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3,4-dihydroxyphenylacetate 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.895
KMT54640.1	KMT54661.1	ACR52_15875	ACR52_15985	5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.725
KMT54640.1	KMT54663.1	ACR52_15875	ACR52_15995	5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxo-hepta-3-ene-1,7-dioate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
KMT54640.1	KMT54664.1	ACR52_15875	ACR52_16000	5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the retro-aldol cleavage of 2-keto-3-deoxy-L-rhamnonate to pyruvate and lactaldehyde; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	0.700
KMT54654.1	KMT54656.1	ACR52_15950	ACR52_15960	Homoprotocatechuate degradative operon repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.688
KMT54654.1	KMT54658.1	ACR52_15950	ACR52_15970	Homoprotocatechuate degradative operon repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.494
KMT54654.1	KMT54659.1	ACR52_15950	ACR52_15975	Homoprotocatechuate degradative operon repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Betaine-aldehyde dehydrogenase; Catalyzes the formation of betaine from betaine aldehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.452
KMT54654.1	KMT54660.1	ACR52_15950	ACR52_15980	Homoprotocatechuate degradative operon repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.	3,4-dihydroxyphenylacetate 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.842
KMT54654.1	KMT54661.1	ACR52_15950	ACR52_15985	Homoprotocatechuate degradative operon repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KMT54654.1	KMT54663.1	ACR52_15950	ACR52_15995	Homoprotocatechuate degradative operon repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxo-hepta-3-ene-1,7-dioate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.730
KMT54654.1	KMT54664.1	ACR52_15950	ACR52_16000	Homoprotocatechuate degradative operon repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the retro-aldol cleavage of 2-keto-3-deoxy-L-rhamnonate to pyruvate and lactaldehyde; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	0.581
KMT54656.1	KMT54640.1	ACR52_15960	ACR52_15875	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
KMT54656.1	KMT54654.1	ACR52_15960	ACR52_15950	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Homoprotocatechuate degradative operon repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.688
KMT54656.1	KMT54657.1	ACR52_15960	ACR52_15965	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxyphenylacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.787
KMT54656.1	KMT54658.1	ACR52_15960	ACR52_15970	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837
KMT54656.1	KMT54659.1	ACR52_15960	ACR52_15975	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Betaine-aldehyde dehydrogenase; Catalyzes the formation of betaine from betaine aldehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
KMT54656.1	KMT54660.1	ACR52_15960	ACR52_15980	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	3,4-dihydroxyphenylacetate 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937