Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KMT52107.1 | KMT52497.1 | ACR52_28905 | ACR52_26980 | Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.987 |
| KMT52107.1 | KMT52618.1 | ACR52_28905 | ACR52_26290 | Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.930 |
| KMT52107.1 | KMT53308.1 | ACR52_28905 | ACR52_22510 | Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA topoisomerase III; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.612 |
| KMT52107.1 | KMT54385.1 | ACR52_28905 | ACR52_16255 | Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Chromosome segregation protein SMC; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.887 |
| KMT52107.1 | KMT54522.1 | ACR52_28905 | ACR52_17005 | Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Helicase UvrD; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.738 |
| KMT52107.1 | KMT54718.1 | ACR52_28905 | ACR52_14640 | Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.962 |
| KMT52107.1 | KMT55329.1 | ACR52_28905 | ACR52_12245 | Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.908 |
| KMT52107.1 | KMT56547.1 | ACR52_28905 | ACR52_06050 | Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.995 |
| KMT52107.1 | KMT56787.1 | ACR52_28905 | ACR52_04175 | Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.962 |
| KMT52107.1 | dinB | ACR52_28905 | ACR52_18205 | Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.588 |
| KMT52107.1 | dinG | ACR52_28905 | ACR52_01755 | Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP-dependent DNA helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase. | 0.856 |
| KMT52107.1 | mutL | ACR52_28905 | ACR52_18650 | Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.984 |
| KMT52107.1 | mutS | ACR52_28905 | ACR52_02485 | Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.985 |
| KMT52107.1 | polA | ACR52_28905 | ACR52_05670 | Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.756 |
| KMT52107.1 | rep | ACR52_28905 | ACR52_10355 | Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP-dependent DNA helicase Rep; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction. | 0.701 |
| KMT52107.1 | rnhA | ACR52_28905 | ACR52_27575 | Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.721 |
| KMT52107.1 | rnhB | ACR52_28905 | ACR52_01950 | Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.489 |
| KMT52107.1 | sbcD | ACR52_28905 | ACR52_16260 | Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.987 |
| KMT52107.1 | topA | ACR52_28905 | ACR52_15580 | Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.774 |
| KMT52497.1 | KMT52107.1 | ACR52_26980 | ACR52_28905 | Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; Derived by automated computational analysis using gene prediction method: Protein Homology. | Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.987 |
page 1 of 28