(38 nodes) Mostly uncharacterized, incl. Base excision repair, and DEAD/H associated network (Pseudomonas sp. KG01)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KMT57211.1	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)
	KMT57212.1	leucyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
	KMT57286.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
	KMT57287.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa)
	KMT57301.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)
	KMT57302.1	Methanol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	KMT57303.1	Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
	KMT57377.1	Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	KMT57378.1	ATP-dependent DNA ligase; Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; Derived by automated computational analysis using gene prediction method: Protein Homology. (544 aa)
	KMT57384.1	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (827 aa)
	KMT57385.1	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	KMT56734.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (91 aa)
	KMT56735.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
	KMT56570.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)
	KMT56572.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
	KMT56216.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0301 (AlgH) family. (189 aa)
	KMT56217.1	Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (145 aa)
	KMT56221.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	KMT56222.1	Peptidase P60; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
	mutM	5-hydroxymethyluracil DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (270 aa)
	KMT56255.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	KMT56256.1	SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	coaE	dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. (207 aa)
	KMT55324.1	Serine kinase/phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
	KMT55399.1	Inducer of phenazine B; Derived by automated computational analysis using gene prediction method: Protein Homology. (734 aa)
	KMT55401.1	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)
	KMT55402.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (613 aa)
	KMT55562.1	ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1415 aa)
	KMT55567.1	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	KMT55568.1	Biotin carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)
	ligD	ATP-dependent DNA ligase; Catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; Derived by automated computational analysis using gene prediction method: Protein Homology. (817 aa)
	ku	DNA repair protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (279 aa)
	KMT54466.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
	KMT54467.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
	KMT52777.1	Sorbosone dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (430 aa)
	KMT52778.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
	KMT52779.1	UV damage repair endonuclease UvdE; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
	KMT52780.1	DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)

Your Current Organism:

Pseudomonas sp. KG01

NCBI taxonomy Id: 1674920
Other names: P. sp. KG01

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KMT52777.1	KMT52778.1	ACR52_24300	ACR52_24305	Sorbosone dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
KMT52777.1	KMT52779.1	ACR52_24300	ACR52_24310	Sorbosone dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	UV damage repair endonuclease UvdE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.569
KMT52777.1	KMT52780.1	ACR52_24300	ACR52_24315	Sorbosone dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
KMT52777.1	KMT55399.1	ACR52_24300	ACR52_12640	Sorbosone dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Inducer of phenazine B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
KMT52777.1	ligD	ACR52_24300	ACR52_16665	Sorbosone dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; Catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
KMT52778.1	KMT52777.1	ACR52_24305	ACR52_24300	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sorbosone dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
KMT52778.1	KMT52779.1	ACR52_24305	ACR52_24310	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	UV damage repair endonuclease UvdE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
KMT52778.1	KMT52780.1	ACR52_24305	ACR52_24315	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
KMT52779.1	KMT52777.1	ACR52_24310	ACR52_24300	UV damage repair endonuclease UvdE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sorbosone dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.569
KMT52779.1	KMT52778.1	ACR52_24310	ACR52_24305	UV damage repair endonuclease UvdE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
KMT52779.1	KMT52780.1	ACR52_24310	ACR52_24315	UV damage repair endonuclease UvdE; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
KMT52780.1	KMT52777.1	ACR52_24315	ACR52_24300	DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sorbosone dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
KMT52780.1	KMT52778.1	ACR52_24315	ACR52_24305	DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
KMT52780.1	KMT52779.1	ACR52_24315	ACR52_24310	DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	UV damage repair endonuclease UvdE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
KMT54466.1	KMT54467.1	ACR52_16675	ACR52_16680	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
KMT54466.1	ku	ACR52_16675	ACR52_16670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA repair protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.550
KMT54466.1	ligD	ACR52_16675	ACR52_16665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; Catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.523
KMT54467.1	KMT54466.1	ACR52_16680	ACR52_16675	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
KMT54467.1	KMT55399.1	ACR52_16680	ACR52_12640	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Inducer of phenazine B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
KMT54467.1	ku	ACR52_16680	ACR52_16670	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA repair protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.518