(25 nodes) Carbohydrate binding network (Pseudomonas sp. KG01)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rbsD	Ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (134 aa)
	KMT57079.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
	KMT57190.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	mdoD	Glucan biosynthesis protein D; Probably involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans (OPGs). Belongs to the OpgD/OpgG family. (541 aa)
	flgG	Makes up the distal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
	KMT56908.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
	KMT56473.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa)
	KMT56121.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (507 aa)
	KMT56326.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)
	opgG	Glucan biosynthesis protein G; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs). (578 aa)
	KMT55667.1	Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glucose-6-phosphate 1-epimerase family. (299 aa)
	KMT54912.1	Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	KMT54915.1	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	KMT53935.1	Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glucose-6-phosphate 1-epimerase family. (281 aa)
	glk	Glucokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial glucokinase family. (318 aa)
	KMT53622.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	KMT53626.1	DeoR faimly transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	KMT53769.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
	KMT53800.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	KMT53397.1	2OG-Fe(II) oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	KMT52603.1	Sugar ABC transporter substrate-binding protein; With AraGH is involved in the transport of arabinose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
	KMT52141.1	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	KMT52289.1	Aldose epimerase; Converts alpha-aldose to the beta-anomer. (382 aa)
	KMT52292.1	Sugar ABC transporter substrate-binding protein; With AraGH is involved in the transport of arabinose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	KMT52306.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)

Your Current Organism:

Pseudomonas sp. KG01

NCBI taxonomy Id: 1674920
Other names: P. sp. KG01

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KMT52141.1	KMT53935.1	ACR52_27430	ACR52_17460	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glucose-6-phosphate 1-epimerase family.	0.466
KMT52141.1	KMT55667.1	ACR52_27430	ACR52_09885	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glucose-6-phosphate 1-epimerase family.	0.453
KMT52289.1	glk	ACR52_28220	ACR52_18040	Aldose epimerase; Converts alpha-aldose to the beta-anomer.	Glucokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial glucokinase family.	0.731
KMT52292.1	KMT52306.1	ACR52_28235	ACR52_28315	Sugar ABC transporter substrate-binding protein; With AraGH is involved in the transport of arabinose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.624
KMT52292.1	KMT57079.1	ACR52_28235	ACR52_00205	Sugar ABC transporter substrate-binding protein; With AraGH is involved in the transport of arabinose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
KMT52292.1	rbsD	ACR52_28235	ACR52_00230	Sugar ABC transporter substrate-binding protein; With AraGH is involved in the transport of arabinose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.	0.698
KMT52306.1	KMT52292.1	ACR52_28315	ACR52_28235	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; With AraGH is involved in the transport of arabinose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.624
KMT52306.1	KMT52603.1	ACR52_28315	ACR52_26215	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; With AraGH is involved in the transport of arabinose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.536
KMT52306.1	KMT53622.1	ACR52_28315	ACR52_19800	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.585
KMT52306.1	KMT53800.1	ACR52_28315	ACR52_20760	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.602
KMT52306.1	KMT56326.1	ACR52_28315	ACR52_08065	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
KMT52306.1	KMT57079.1	ACR52_28315	ACR52_00205	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.624
KMT52306.1	KMT57190.1	ACR52_28315	ACR52_00845	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
KMT52603.1	KMT52306.1	ACR52_26215	ACR52_28315	Sugar ABC transporter substrate-binding protein; With AraGH is involved in the transport of arabinose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.536
KMT52603.1	KMT57079.1	ACR52_26215	ACR52_00205	Sugar ABC transporter substrate-binding protein; With AraGH is involved in the transport of arabinose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
KMT52603.1	rbsD	ACR52_26215	ACR52_00230	Sugar ABC transporter substrate-binding protein; With AraGH is involved in the transport of arabinose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.	0.698
KMT53622.1	KMT52306.1	ACR52_19800	ACR52_28315	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.585
KMT53622.1	KMT53626.1	ACR52_19800	ACR52_19820	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DeoR faimly transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
KMT53622.1	KMT57079.1	ACR52_19800	ACR52_00205	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
KMT53622.1	rbsD	ACR52_19800	ACR52_00230	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.	0.924