(33 nodes) Intracellular organelle lumen network (Pseudomonas sp. KG01)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KMT55553.1	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
	KMT57224.1	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)
	KMT57377.1	Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	KMT57648.1	Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)
	KMT56711.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
	KMT56570.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)
	KMT56611.1	VdlD; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)
	KMT56132.1	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)
	KMT56184.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
	KMT56259.1	Cytochrome C oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	KMT55668.1	Long-chain acyl-CoA thioester hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
	KMT55715.1	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (570 aa)
	KMT54992.1	Maleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)
	nusA	Transcription elongation factor NusA; Participates in both transcription termination and antitermination. (493 aa)
	nusG	Antitermination protein NusG; Participates in transcription elongation, termination and antitermination. (177 aa)
	KMT54973.1	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
	KMT54388.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa)
	KMT54417.1	Alanine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)
	KMT53880.1	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)
	KMT54033.1	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	KMT53829.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	KMT53853.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (261 aa)
	KMT53400.1	Thiol-disulfide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)
	KMT52844.1	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)
	KMT52862.1	DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)
	KMT52867.1	Alpha-ketoglutarate-dependent dioxygenase; Oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	KMT52913.1	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (257 aa)
	KMT52749.1	Chromophore maturation protein PvdO; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	KMT52687.1	Pyruvate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
	gfa	Glutathione-dependent formaldehyde-activating protein; Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione; Belongs to the Gfa family. (192 aa)
	KMT52595.1	Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	KMT52499.1	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (133 aa)
	KMT52471.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (70 aa)

Your Current Organism:

Pseudomonas sp. KG01

NCBI taxonomy Id: 1674920
Other names: P. sp. KG01

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KMT52471.1	KMT52687.1	ACR52_27160	ACR52_25590	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
KMT52471.1	KMT52913.1	ACR52_27160	ACR52_25055	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.492
KMT52471.1	KMT53853.1	ACR52_27160	ACR52_21045	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.492
KMT52471.1	KMT54033.1	ACR52_27160	ACR52_17975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
KMT52471.1	KMT54973.1	ACR52_27160	ACR52_14400	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
KMT52471.1	KMT56132.1	ACR52_27160	ACR52_07060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
KMT52471.1	KMT57224.1	ACR52_27160	ACR52_01035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
KMT52595.1	KMT52687.1	ACR52_26175	ACR52_25590	Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
KMT52595.1	KMT52913.1	ACR52_26175	ACR52_25055	Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.580
KMT52595.1	KMT53853.1	ACR52_26175	ACR52_21045	Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.534
KMT52595.1	KMT54033.1	ACR52_26175	ACR52_17975	Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
KMT52595.1	KMT54973.1	ACR52_26175	ACR52_14400	Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
KMT52595.1	KMT57224.1	ACR52_26175	ACR52_01035	Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
KMT52687.1	KMT52471.1	ACR52_25590	ACR52_27160	Pyruvate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
KMT52687.1	KMT52595.1	ACR52_25590	ACR52_26175	Pyruvate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
KMT52687.1	KMT56132.1	ACR52_25590	ACR52_07060	Pyruvate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
KMT52687.1	KMT57224.1	ACR52_25590	ACR52_01035	Pyruvate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.712
KMT52862.1	KMT57377.1	ACR52_24775	ACR52_01805	DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
KMT52913.1	KMT52471.1	ACR52_25055	ACR52_27160	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
KMT52913.1	KMT52595.1	ACR52_25055	ACR52_26175	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580