(17 nodes) Beta-grasp domain superfamily network (Pseudomonas sp. KG01)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	thrS	threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). (640 aa)
	KMT56647.1	Sulfurylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (620 aa)
	KMT56680.1	FAD-binding molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (482 aa)
	relA	(p)ppGpp synthetase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. (747 aa)
	KMT56116.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
	KMT56236.1	Thiamine biosynthesis protein ThiS; With ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. (66 aa)
	KMT56308.1	2Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)
	antC	Anthranilate dioxygenase reductase; Catalyzes the formation of catechol from anthranilate; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	KMT55727.1	(p)ppGpp synthetase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. (701 aa)
	KMT55022.1	Molybdenum cofactor biosynthesis protein MoaD; Derived by automated computational analysis using gene prediction method: Protein Homology. (80 aa)
	ychF	GTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (366 aa)
	KMT55438.1	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (174 aa)
	KMT54034.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	KMT53458.1	CDP-6-deoxy-delta-3,4-glucoseen reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	sdhB	Part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	KMT52320.1	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (151 aa)
	KMT52370.1	Vanillate O-demethylase oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)

Your Current Organism:

Pseudomonas sp. KG01

NCBI taxonomy Id: 1674920
Other names: P. sp. KG01

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KMT52320.1	KMT55438.1	ACR52_28385	ACR52_12845	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
KMT52320.1	KMT56680.1	ACR52_28385	ACR52_03630	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
KMT52370.1	KMT53458.1	ACR52_28670	ACR52_21795	Vanillate O-demethylase oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	CDP-6-deoxy-delta-3,4-glucoseen reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.868
KMT52370.1	KMT54034.1	ACR52_28670	ACR52_17980	Vanillate O-demethylase oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
KMT52370.1	KMT56116.1	ACR52_28670	ACR52_06980	Vanillate O-demethylase oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
KMT52370.1	KMT56647.1	ACR52_28670	ACR52_03460	Vanillate O-demethylase oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfurylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
KMT52370.1	antC	ACR52_28670	ACR52_08505	Vanillate O-demethylase oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anthranilate dioxygenase reductase; Catalyzes the formation of catechol from anthranilate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.873
KMT53458.1	KMT52370.1	ACR52_21795	ACR52_28670	CDP-6-deoxy-delta-3,4-glucoseen reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Vanillate O-demethylase oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.868
KMT53458.1	KMT54034.1	ACR52_21795	ACR52_17980	CDP-6-deoxy-delta-3,4-glucoseen reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
KMT53458.1	KMT56116.1	ACR52_21795	ACR52_06980	CDP-6-deoxy-delta-3,4-glucoseen reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
KMT53458.1	KMT56308.1	ACR52_21795	ACR52_07970	CDP-6-deoxy-delta-3,4-glucoseen reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
KMT53458.1	KMT56647.1	ACR52_21795	ACR52_03460	CDP-6-deoxy-delta-3,4-glucoseen reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfurylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
KMT53458.1	antC	ACR52_21795	ACR52_08505	CDP-6-deoxy-delta-3,4-glucoseen reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anthranilate dioxygenase reductase; Catalyzes the formation of catechol from anthranilate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.894
KMT53458.1	sdhB	ACR52_21795	ACR52_23395	CDP-6-deoxy-delta-3,4-glucoseen reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.519
KMT54034.1	KMT52370.1	ACR52_17980	ACR52_28670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Vanillate O-demethylase oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
KMT54034.1	KMT53458.1	ACR52_17980	ACR52_21795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CDP-6-deoxy-delta-3,4-glucoseen reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
KMT54034.1	KMT56116.1	ACR52_17980	ACR52_06980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
KMT54034.1	KMT56308.1	ACR52_17980	ACR52_07970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
KMT54034.1	KMT56647.1	ACR52_17980	ACR52_03460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfurylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
KMT54034.1	antC	ACR52_17980	ACR52_08505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anthranilate dioxygenase reductase; Catalyzes the formation of catechol from anthranilate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.895