(31 nodes) Mostly uncharacterized, incl. Photosystem II assembly, and Thioredoxin-like superfamily network (Prochlorococcus marinus CCMP1375)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	ppiB	Peptidyl-prolyl cis-trans isomerase; Cyclophilin family. (358 aa)
	Pro_0072	Protein implicated in RNA metabolism (PRC-barrel domain). (357 aa)
	Pro_0075	YGGT family membrane protein. (106 aa)
	Pro_0120	Uncharacterized conserved membrane protein; Probably membrane disulfide-isomerase. (313 aa)
	Pro_0171	Conserved NnrU/NnuR ortholog membrane enzyme; Belongs to isoprenylcysteine O-methyltransferase family; Nitric dioxide metabolism PM: 9171397. (245 aa)
	Pro_0326	Rubredoxin. (143 aa)
	Pro_0327	Photosystem II stability/assembly factor; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity. (339 aa)
	fdx	Ferredoxin. (130 aa)
	psb27	Photosystem II protein Psb27; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster. (144 aa)
	Pro_0528	Uncharacterized YfiH family conserved protein; Belongs to the multicopper oxidase YfiH/RL5 family. (262 aa)
	Pro_0529	Uncharacterized protein; Conserved in cyanobacteria. (297 aa)
	Pro_0752	Uncharacterized membrane protein; Conserved in cyanobacteria. (125 aa)
	psb28	Photosystem II reaction centre W protein; Psb28; Belongs to the Psb28 family. (117 aa)
	Pro_0773	Uncharacterized protein; Conserved in cyanobacteria; Also present in plants, domain may be involved in signal transduction, see GI:17232441. (241 aa)
	Pro_0776	Alpha/beta superfamily hydrolase. (243 aa)
	Pro_0894	Uncharacterized membrane protein; Conserved in cyanobacteria. (168 aa)
	Pro_0896	Uncharacterized membrane protein; Conserved in cyanobacteria. (211 aa)
	thf1	Uncharacterized protein; May be involved in photosynthetic membrane biogenesis. (214 aa)
	Pro_0930	Uncharacterized conserved membrane protein. (104 aa)
	Pro_0931	Uncharacterized conserved membrane protein. (104 aa)
	ccp-2	Peroxiredoxin. (183 aa)
	Pro_0972	Uncharacterized membrane protein; Conserved in cyanobacteria. (189 aa)
	Pro_0991	Uncharacterized protein; Conserved in cyanobacteria. (155 aa)
	Pro_1056	Uncharacterized protein; Conserved in cyanobacteria. (116 aa)
	Pro_1187	Inactivated Zn-dependent hydrolase of the beta-lactamase fold. (249 aa)
	Pro_1301	Uncharacterized membrane protein; Conserved in cyanobacteria. (133 aa)
	Pro_1593	Uncharacterized protein; Probably a ribosomal protein or a ribosome-associated protein; Belongs to the chloroplast-specific ribosomal protein cS23 family. (126 aa)
	Pro_1715	HAD superfamily hydrolase. (258 aa)
	Pro_1763	Uncharacterized protein; Conserved in cyanobacteria. (61 aa)
	Pro_1823	TPR-repeat protein; Involved in photosystem I assembly, ycf3 chloroplast protein homolog. (185 aa)
	Pro_1873	Uncharacterized membrane protein; Conserved in cyanobacteria; Also present in plants (chloroplasts). (152 aa)

Your Current Organism:

Prochlorococcus marinus CCMP1375

NCBI taxonomy Id: 167539
Other names: P. marinus subsp. marinus str. CCMP1375, Prochlorococcus marinus SS120, Prochlorococcus marinus subsp. marinus str. CCMP1375, Prochlorococcus marinus subsp. marinus str. SS120

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Pro_0072	Pro_0326	Pro_0072	Pro_0326	Protein implicated in RNA metabolism (PRC-barrel domain).	Rubredoxin.	0.673
Pro_0072	Pro_0327	Pro_0072	Pro_0327	Protein implicated in RNA metabolism (PRC-barrel domain).	Photosystem II stability/assembly factor; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity.	0.443
Pro_0072	Pro_0529	Pro_0072	Pro_0529	Protein implicated in RNA metabolism (PRC-barrel domain).	Uncharacterized protein; Conserved in cyanobacteria.	0.578
Pro_0072	Pro_0752	Pro_0072	Pro_0752	Protein implicated in RNA metabolism (PRC-barrel domain).	Uncharacterized membrane protein; Conserved in cyanobacteria.	0.670
Pro_0072	Pro_0773	Pro_0072	Pro_0773	Protein implicated in RNA metabolism (PRC-barrel domain).	Uncharacterized protein; Conserved in cyanobacteria; Also present in plants, domain may be involved in signal transduction, see GI:17232441.	0.635
Pro_0072	Pro_0776	Pro_0072	Pro_0776	Protein implicated in RNA metabolism (PRC-barrel domain).	Alpha/beta superfamily hydrolase.	0.734
Pro_0072	Pro_0896	Pro_0072	Pro_0896	Protein implicated in RNA metabolism (PRC-barrel domain).	Uncharacterized membrane protein; Conserved in cyanobacteria.	0.766
Pro_0072	Pro_0972	Pro_0072	Pro_0972	Protein implicated in RNA metabolism (PRC-barrel domain).	Uncharacterized membrane protein; Conserved in cyanobacteria.	0.772
Pro_0072	Pro_0991	Pro_0072	Pro_0991	Protein implicated in RNA metabolism (PRC-barrel domain).	Uncharacterized protein; Conserved in cyanobacteria.	0.745
Pro_0072	Pro_1056	Pro_0072	Pro_1056	Protein implicated in RNA metabolism (PRC-barrel domain).	Uncharacterized protein; Conserved in cyanobacteria.	0.594
Pro_0072	Pro_1301	Pro_0072	Pro_1301	Protein implicated in RNA metabolism (PRC-barrel domain).	Uncharacterized membrane protein; Conserved in cyanobacteria.	0.710
Pro_0072	Pro_1593	Pro_0072	Pro_1593	Protein implicated in RNA metabolism (PRC-barrel domain).	Uncharacterized protein; Probably a ribosomal protein or a ribosome-associated protein; Belongs to the chloroplast-specific ribosomal protein cS23 family.	0.764
Pro_0072	Pro_1763	Pro_0072	Pro_1763	Protein implicated in RNA metabolism (PRC-barrel domain).	Uncharacterized protein; Conserved in cyanobacteria.	0.575
Pro_0072	Pro_1823	Pro_0072	Pro_1823	Protein implicated in RNA metabolism (PRC-barrel domain).	TPR-repeat protein; Involved in photosystem I assembly, ycf3 chloroplast protein homolog.	0.743
Pro_0072	Pro_1873	Pro_0072	Pro_1873	Protein implicated in RNA metabolism (PRC-barrel domain).	Uncharacterized membrane protein; Conserved in cyanobacteria; Also present in plants (chloroplasts).	0.650
Pro_0072	fdx	Pro_0072	Pro_0356	Protein implicated in RNA metabolism (PRC-barrel domain).	Ferredoxin.	0.559
Pro_0072	psb27	Pro_0072	Pro_0507	Protein implicated in RNA metabolism (PRC-barrel domain).	Photosystem II protein Psb27; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster.	0.632
Pro_0072	psb28	Pro_0072	Pro_0771	Protein implicated in RNA metabolism (PRC-barrel domain).	Photosystem II reaction centre W protein; Psb28; Belongs to the Psb28 family.	0.651
Pro_0072	thf1	Pro_0072	Pro_0919	Protein implicated in RNA metabolism (PRC-barrel domain).	Uncharacterized protein; May be involved in photosynthetic membrane biogenesis.	0.537
Pro_0075	Pro_0120	Pro_0075	Pro_0120	YGGT family membrane protein.	Uncharacterized conserved membrane protein; Probably membrane disulfide-isomerase.	0.745

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