(31 nodes) Formation of a pool of free 40S subunits network (Paramormyrops kingsleyae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rps21	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (81 aa)
	rpl31	Ribosomal protein L31. (125 aa)
	rps11	Si:dkey-159f12.2; Belongs to the universal ribosomal protein uS17 family. (159 aa)
	rpl17	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (184 aa)
	rpl14	Ribosomal protein L14. (142 aa)
	rps3	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (261 aa)
	rps12	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (132 aa)
	rpl12	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (202 aa)
	rpl27	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (136 aa)
	rpl34	Ribosomal protein L34. (135 aa)
	rpl13a	Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (205 aa)
	rpl6	Ribosomal protein L6. (264 aa)
	rpl13	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (223 aa)
	LOC111860719	Ribosomal protein L26. (145 aa)
	Rps7	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (263 aa)
	LOC111855043	Ribosomal protein S10. (184 aa)
	RPL9	Ribosomal protein L9. (242 aa)
	rpsa	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (309 aa)
	ENSPKIP00000025042	Ribosomal protein S28. (53 aa)
	rps24	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (131 aa)
	rpl36	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (126 aa)
	rpl15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	rps8	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (210 aa)
	rps5	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (203 aa)
	rpl38	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
	Rps9	Ribosomal_S4 domain-containing protein. (79 aa)
	rpl23a	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (155 aa)
	Rpl21	Ribosomal protein L21. (163 aa)
	rpl35a	Ribosomal protein L35a. (157 aa)
	rpl28	Ribosomal protein L28. (137 aa)
	rplp0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (316 aa)

Your Current Organism:

Paramormyrops kingsleyae

NCBI taxonomy Id: 1676925
Other names: Brienomyrus kingsleyae, Brienomyrus sp. CAB, Mormyrus kingsleyae, P. kingsleyae, Pollimyrus kingsleyae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPKIP00000025042	LOC111855043	ENSPKIP00000025042	ENSPKIP00000017401	Ribosomal protein S28.	Ribosomal protein S10.	0.999
ENSPKIP00000025042	LOC111860719	ENSPKIP00000025042	ENSPKIP00000016384	Ribosomal protein S28.	Ribosomal protein L26.	0.999
ENSPKIP00000025042	RPL9	ENSPKIP00000025042	ENSPKIP00000019146	Ribosomal protein S28.	Ribosomal protein L9.	0.999
ENSPKIP00000025042	Rpl21	ENSPKIP00000025042	ENSPKIP00000034112	Ribosomal protein S28.	Ribosomal protein L21.	0.999
ENSPKIP00000025042	Rps7	ENSPKIP00000025042	ENSPKIP00000017025	Ribosomal protein S28.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
ENSPKIP00000025042	Rps9	ENSPKIP00000025042	ENSPKIP00000031565	Ribosomal protein S28.	Ribosomal_S4 domain-containing protein.	0.999
ENSPKIP00000025042	rpl12	ENSPKIP00000025042	ENSPKIP00000011574	Ribosomal protein S28.	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	0.999
ENSPKIP00000025042	rpl13	ENSPKIP00000025042	ENSPKIP00000014901	Ribosomal protein S28.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
ENSPKIP00000025042	rpl13a	ENSPKIP00000025042	ENSPKIP00000013197	Ribosomal protein S28.	Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.	0.999
ENSPKIP00000025042	rpl14	ENSPKIP00000025042	ENSPKIP00000008555	Ribosomal protein S28.	Ribosomal protein L14.	0.999
ENSPKIP00000025042	rpl15	ENSPKIP00000025042	ENSPKIP00000028046	Ribosomal protein S28.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
ENSPKIP00000025042	rpl17	ENSPKIP00000025042	ENSPKIP00000004870	Ribosomal protein S28.	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.	0.999
ENSPKIP00000025042	rpl23a	ENSPKIP00000025042	ENSPKIP00000033633	Ribosomal protein S28.	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.999
ENSPKIP00000025042	rpl27	ENSPKIP00000025042	ENSPKIP00000011655	Ribosomal protein S28.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.999
ENSPKIP00000025042	rpl28	ENSPKIP00000025042	ENSPKIP00000035941	Ribosomal protein S28.	Ribosomal protein L28.	0.999
ENSPKIP00000025042	rpl31	ENSPKIP00000025042	ENSPKIP00000001350	Ribosomal protein S28.	Ribosomal protein L31.	0.999
ENSPKIP00000025042	rpl34	ENSPKIP00000025042	ENSPKIP00000013126	Ribosomal protein S28.	Ribosomal protein L34.	0.999
ENSPKIP00000025042	rpl35a	ENSPKIP00000025042	ENSPKIP00000035234	Ribosomal protein S28.	Ribosomal protein L35a.	0.999
ENSPKIP00000025042	rpl36	ENSPKIP00000025042	ENSPKIP00000026725	Ribosomal protein S28.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.999
ENSPKIP00000025042	rpl38	ENSPKIP00000025042	ENSPKIP00000031327	Ribosomal protein S28.	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.999