(18 nodes) Organellar large ribosomal subunit network (Paramormyrops kingsleyae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mrpl13	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family. (179 aa)
	mrpl17	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (166 aa)
	ENSPKIP00000004103	Mitochondrial ribosomal protein L9. (253 aa)
	ENSPKIP00000006378	Mitochondrial ribosomal protein L33. (60 aa)
	mrpl2	Mitochondrial ribosomal protein L2. (314 aa)
	mrpl3	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (346 aa)
	ENSPKIP00000008977	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (107 aa)
	mrpl20	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family. (149 aa)
	mrpl19	Mitochondrial ribosomal protein L19. (286 aa)
	mrps6	Mitochondrial ribosomal protein S6. (121 aa)
	rpl23	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	mrpl4	Mitochondrial ribosomal protein L4. (303 aa)
	Mrpl22	Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family. (327 aa)
	mrpl16	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (255 aa)
	mrpl15	Mitochondrial ribosomal protein L15. (296 aa)
	mrpl21	Mitochondrial ribosomal protein L21. (213 aa)
	ENSPKIP00000032350	Ribosomal_L12 domain-containing protein. (199 aa)
	mrpl32	Mitochondrial ribosomal protein L32. (177 aa)

Your Current Organism:

Paramormyrops kingsleyae

NCBI taxonomy Id: 1676925
Other names: Brienomyrus kingsleyae, Brienomyrus sp. CAB, Mormyrus kingsleyae, P. kingsleyae, Pollimyrus kingsleyae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPKIP00000004103	ENSPKIP00000006378	ENSPKIP00000004103	ENSPKIP00000006378	Mitochondrial ribosomal protein L9.	Mitochondrial ribosomal protein L33.	0.999
ENSPKIP00000004103	ENSPKIP00000008977	ENSPKIP00000004103	ENSPKIP00000008977	Mitochondrial ribosomal protein L9.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.998
ENSPKIP00000004103	ENSPKIP00000032350	ENSPKIP00000004103	ENSPKIP00000032350	Mitochondrial ribosomal protein L9.	Ribosomal_L12 domain-containing protein.	0.999
ENSPKIP00000004103	Mrpl22	ENSPKIP00000004103	ENSPKIP00000028071	Mitochondrial ribosomal protein L9.	Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.	0.998
ENSPKIP00000004103	mrpl13	ENSPKIP00000004103	ENSPKIP00000000064	Mitochondrial ribosomal protein L9.	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.998
ENSPKIP00000004103	mrpl15	ENSPKIP00000004103	ENSPKIP00000029754	Mitochondrial ribosomal protein L9.	Mitochondrial ribosomal protein L15.	0.997
ENSPKIP00000004103	mrpl16	ENSPKIP00000004103	ENSPKIP00000028860	Mitochondrial ribosomal protein L9.	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	0.997
ENSPKIP00000004103	mrpl17	ENSPKIP00000004103	ENSPKIP00000004083	Mitochondrial ribosomal protein L9.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.999
ENSPKIP00000004103	mrpl19	ENSPKIP00000004103	ENSPKIP00000019585	Mitochondrial ribosomal protein L9.	Mitochondrial ribosomal protein L19.	0.999
ENSPKIP00000004103	mrpl2	ENSPKIP00000004103	ENSPKIP00000006973	Mitochondrial ribosomal protein L9.	Mitochondrial ribosomal protein L2.	0.998
ENSPKIP00000004103	mrpl20	ENSPKIP00000004103	ENSPKIP00000015582	Mitochondrial ribosomal protein L9.	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.	0.999
ENSPKIP00000004103	mrpl21	ENSPKIP00000004103	ENSPKIP00000032036	Mitochondrial ribosomal protein L9.	Mitochondrial ribosomal protein L21.	0.999
ENSPKIP00000004103	mrpl3	ENSPKIP00000004103	ENSPKIP00000008008	Mitochondrial ribosomal protein L9.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.998
ENSPKIP00000004103	mrpl32	ENSPKIP00000004103	ENSPKIP00000042000	Mitochondrial ribosomal protein L9.	Mitochondrial ribosomal protein L32.	0.999
ENSPKIP00000004103	mrpl4	ENSPKIP00000004103	ENSPKIP00000025085	Mitochondrial ribosomal protein L9.	Mitochondrial ribosomal protein L4.	0.997
ENSPKIP00000004103	mrps6	ENSPKIP00000004103	ENSPKIP00000022535	Mitochondrial ribosomal protein L9.	Mitochondrial ribosomal protein S6.	0.999
ENSPKIP00000004103	rpl23	ENSPKIP00000004103	ENSPKIP00000023578	Mitochondrial ribosomal protein L9.	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.999
ENSPKIP00000006378	ENSPKIP00000004103	ENSPKIP00000006378	ENSPKIP00000004103	Mitochondrial ribosomal protein L33.	Mitochondrial ribosomal protein L9.	0.999
ENSPKIP00000006378	ENSPKIP00000008977	ENSPKIP00000006378	ENSPKIP00000008977	Mitochondrial ribosomal protein L33.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.999
ENSPKIP00000006378	ENSPKIP00000032350	ENSPKIP00000006378	ENSPKIP00000032350	Mitochondrial ribosomal protein L33.	Ribosomal_L12 domain-containing protein.	0.999