47 items (Paramormyrops kingsleyae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	bahd1	Bromo adjacent homology domain containing 1. (925 aa)
	LOC111844934	Lamin L3; Belongs to the intermediate filament family. (603 aa)
	Cenpv	Centromere protein V. (127 aa)
	EZH1	Enhancer of zeste 1 polycomb repressive complex 2 subunit. (800 aa)
	dicer1	Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily. (1907 aa)
	LOC111853505	Lamin A/C; Belongs to the intermediate filament family. (728 aa)
	hmga2	High mobility group AT-hook 2. (107 aa)
	PPM1D	Protein phosphatase, Mg2+/Mn2+ dependent 1D. (490 aa)
	mecp2	Methyl CpG binding protein 2. (552 aa)
	rrp8	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (564 aa)
	LOC111842287	Uncharacterized protein. (316 aa)
	mbd3	Methyl-CpG binding domain protein 3a. (297 aa)
	pole3	Polymerase (DNA directed), epsilon 3 (p17 subunit). (148 aa)
	bend3	Uncharacterized protein. (840 aa)
	EZH1-2	Enhancer of zeste 1 polycomb repressive complex 2 subunit. (745 aa)
	ppm1d	Protein phosphatase, Mg2+/Mn2+ dependent, 1Da. (556 aa)
	spty2d1	Uncharacterized protein. (649 aa)
	EZH2	Enhancer of zeste 2 polycomb repressive complex 2 subunit. (725 aa)
	EZH2-2	Enhancer of zeste 2 polycomb repressive complex 2 subunit. (766 aa)
	ENSPKIP00000014547	Uncharacterized protein. (108 aa)
	znfx1	Zinc finger, NFX1-type containing 1. (1893 aa)
	rif1	Replication timing regulatory factor 1. (2285 aa)
	smyd5	SMYD family member 5. (415 aa)
	LOC111835890	DNA (cytosine-5-)-methyltransferase 3 beta, duplicate a; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (1468 aa)
	sirt1	Deacetylase sirtuin-type domain-containing protein. (735 aa)
	LOC111849516	AAA_12 domain-containing protein. (2210 aa)
	LOC111855685	DUF3715 domain-containing protein. (1644 aa)
	ENSPKIP00000023005	Bmi1 polycomb ring finger oncogene 1b. (389 aa)
	Morc2	MORC family CW-type zinc finger 2. (822 aa)
	lmnb2	Lamin B2; Belongs to the intermediate filament family. (584 aa)
	LMNA	Lamin A/C; Belongs to the intermediate filament family. (649 aa)
	smchd1	Structural maintenance of chromosomes flexible hinge domain containing 1. (2046 aa)
	LOC111860883	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. (372 aa)
	ENSPKIP00000028718	Cytosine-specific methyltransferase. (497 aa)
	LOC111839738	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. (370 aa)
	TASOR	Transcription activation suppressor a. (1839 aa)
	LOC111837856	RING-type domain-containing protein. (328 aa)
	hells	Helicase, lymphoid specific. (887 aa)
	Sirt6	Sirtuin 6. (386 aa)
	fam172a	Family with sequence similarity 172 member A. (452 aa)
	LOC111840252	Uncharacterized protein. (1916 aa)
	lmnb1	Lamin B1; Belongs to the intermediate filament family. (610 aa)
	rb1	Retinoblastoma 1. (913 aa)
	ENSPKIP00000037174	Uncharacterized protein. (203 aa)
	LOC111843782	Methyl-CpG binding domain protein 2. (262 aa)
	dot1l	Histone-lysine N-methyltransferase, H3 lysine-79 specific. (1609 aa)
	hat1	Histone acetyltransferase type B catalytic subunit; Acetylates soluble but not nucleosomal histone H4 at 'Lys-5' (H4K5ac) and 'Lys-12' (H4K12ac) and, to a lesser extent, acetylates histone H2A at 'Lys-5' (H2AK5ac). Has intrinsic substrate specificity that modifies lysine in recognition sequence GXGKXG. (408 aa)

Your Current Organism:

Paramormyrops kingsleyae

NCBI taxonomy Id: 1676925
Other names: Brienomyrus kingsleyae, Brienomyrus sp. CAB, Mormyrus kingsleyae, P. kingsleyae, Pollimyrus kingsleyae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPKIP00000023005	EZH1	ENSPKIP00000023005	ENSPKIP00000000826	Bmi1 polycomb ring finger oncogene 1b.	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	0.653
ENSPKIP00000023005	EZH1-2	ENSPKIP00000023005	ENSPKIP00000012811	Bmi1 polycomb ring finger oncogene 1b.	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	0.653
ENSPKIP00000023005	EZH2	ENSPKIP00000023005	ENSPKIP00000013922	Bmi1 polycomb ring finger oncogene 1b.	Enhancer of zeste 2 polycomb repressive complex 2 subunit.	0.653
ENSPKIP00000023005	EZH2-2	ENSPKIP00000023005	ENSPKIP00000014522	Bmi1 polycomb ring finger oncogene 1b.	Enhancer of zeste 2 polycomb repressive complex 2 subunit.	0.653
ENSPKIP00000028718	ENSPKIP00000037174	ENSPKIP00000028718	ENSPKIP00000037174	Cytosine-specific methyltransferase.	Uncharacterized protein.	0.950
ENSPKIP00000028718	EZH1	ENSPKIP00000028718	ENSPKIP00000000826	Cytosine-specific methyltransferase.	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	0.768
ENSPKIP00000028718	EZH1-2	ENSPKIP00000028718	ENSPKIP00000012811	Cytosine-specific methyltransferase.	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	0.768
ENSPKIP00000028718	EZH2	ENSPKIP00000028718	ENSPKIP00000013922	Cytosine-specific methyltransferase.	Enhancer of zeste 2 polycomb repressive complex 2 subunit.	0.768
ENSPKIP00000028718	EZH2-2	ENSPKIP00000028718	ENSPKIP00000014522	Cytosine-specific methyltransferase.	Enhancer of zeste 2 polycomb repressive complex 2 subunit.	0.768
ENSPKIP00000028718	LOC111835890	ENSPKIP00000028718	ENSPKIP00000019923	Cytosine-specific methyltransferase.	DNA (cytosine-5-)-methyltransferase 3 beta, duplicate a; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.844
ENSPKIP00000028718	LOC111839738	ENSPKIP00000028718	ENSPKIP00000029494	Cytosine-specific methyltransferase.	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	0.416
ENSPKIP00000028718	LOC111843782	ENSPKIP00000028718	ENSPKIP00000037667	Cytosine-specific methyltransferase.	Methyl-CpG binding domain protein 2.	0.508
ENSPKIP00000028718	LOC111860883	ENSPKIP00000028718	ENSPKIP00000028661	Cytosine-specific methyltransferase.	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	0.416
ENSPKIP00000028718	hells	ENSPKIP00000028718	ENSPKIP00000029824	Cytosine-specific methyltransferase.	Helicase, lymphoid specific.	0.404
ENSPKIP00000028718	mbd3	ENSPKIP00000028718	ENSPKIP00000011524	Cytosine-specific methyltransferase.	Methyl-CpG binding domain protein 3a.	0.508
ENSPKIP00000028718	mecp2	ENSPKIP00000028718	ENSPKIP00000008532	Cytosine-specific methyltransferase.	Methyl CpG binding protein 2.	0.586
ENSPKIP00000028718	rb1	ENSPKIP00000028718	ENSPKIP00000036319	Cytosine-specific methyltransferase.	Retinoblastoma 1.	0.413
ENSPKIP00000028718	sirt1	ENSPKIP00000028718	ENSPKIP00000019993	Cytosine-specific methyltransferase.	Deacetylase sirtuin-type domain-containing protein.	0.555
ENSPKIP00000037174	ENSPKIP00000028718	ENSPKIP00000037174	ENSPKIP00000028718	Uncharacterized protein.	Cytosine-specific methyltransferase.	0.950
ENSPKIP00000037174	EZH1	ENSPKIP00000037174	ENSPKIP00000000826	Uncharacterized protein.	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	0.768