STRINGSTRING
prpf19 prpf19 LOC111850394 LOC111850394 LOC111853522 LOC111853522 sf3b4 sf3b4 ENSPKIP00000003236 ENSPKIP00000003236 ENSPKIP00000005610 ENSPKIP00000005610 LOC111856763 LOC111856763 SRSF7 SRSF7 ENSPKIP00000006485 ENSPKIP00000006485 RBM38-2 RBM38-2 LOC111835034 LOC111835034 Celf4 Celf4 ENSPKIP00000040471 ENSPKIP00000040471 C1qbp C1qbp RBM20 RBM20 RBM39 RBM39 eif4a3 eif4a3 rbm7 rbm7 ENSPKIP00000037833 ENSPKIP00000037833 nup98 nup98 snw1 snw1 LOC111855993 LOC111855993 ENSPKIP00000035519 ENSPKIP00000035519 FXR1 FXR1 ENSPKIP00000034685 ENSPKIP00000034685 RBM15 RBM15 smu1 smu1 LOC111859084 LOC111859084 Ybx1 Ybx1 celf1 celf1 fam172a fam172a tra2a tra2a LOC111854644 LOC111854644 ENSPKIP00000031762 ENSPKIP00000031762 LOC111853356 LOC111853356 Khdrbs1 Khdrbs1 LOC111834942 LOC111834942 LOC111836699 LOC111836699 ENSPKIP00000029706 ENSPKIP00000029706 LOC111848348 LOC111848348 LOC111853312 LOC111853312 cirbp cirbp rbfox3 rbfox3 Rbm15b Rbm15b tra2b tra2b LOC111850867 LOC111850867 ENSPKIP00000027533 ENSPKIP00000027533 srrm4 srrm4 acin1 acin1 LOC111859646 LOC111859646 jmjd6 jmjd6 sfswap sfswap ENSPKIP00000025458 ENSPKIP00000025458 srrm1 srrm1 LOC111844059 LOC111844059 LOC111845381 LOC111845381 DDX17 DDX17 dazap1 dazap1 LOC111843288 LOC111843288 LOC111844699 LOC111844699 ENSPKIP00000023921 ENSPKIP00000023921 zc3h10 zc3h10 LOC111837706 LOC111837706 ENSPKIP00000023095 ENSPKIP00000023095 DDX5 DDX5 LOC111844047 LOC111844047 Magoh Magoh LOC111844735 LOC111844735 LOC111834077 LOC111834077 LOC111848218 LOC111848218 LOC111840052 LOC111840052 ENSPKIP00000017741 ENSPKIP00000017741 rbm25 rbm25 LOC111855036 LOC111855036 HMX2 HMX2 LOC111855045 LOC111855045 ENSPKIP00000016472 ENSPKIP00000016472 ncl ncl LOC111845294 LOC111845294 KHDRBS3 KHDRBS3 LOC111848172 LOC111848172 sap18 sap18 rbm24 rbm24 SNRPC SNRPC fmr1 fmr1 WTAP WTAP ENSPKIP00000007696 ENSPKIP00000007696 LOC111848696 LOC111848696 LOC111849985 LOC111849985 ENSPKIP00000009133 ENSPKIP00000009133 CIRBP CIRBP ENSPKIP00000009634 ENSPKIP00000009634 ENSPKIP00000000214 ENSPKIP00000000214 LOC111857255 LOC111857255 ENSPKIP00000000609 ENSPKIP00000000609 LOC111840998 LOC111840998 ENSPKIP00000000848 ENSPKIP00000000848 LOC111847999 LOC111847999 LOC111840548 LOC111840548 rbmx rbmx ENSPKIP00000009954 ENSPKIP00000009954 LOC111840563 LOC111840563 ENSPKIP00000009674 ENSPKIP00000009674 ENSPKIP00000009645 ENSPKIP00000009645 ENSPKIP00000009624 ENSPKIP00000009624 NOVA1 NOVA1 srsf3 srsf3 ENSPKIP00000013029 ENSPKIP00000013029 ENSPKIP00000012344 ENSPKIP00000012344 nsrp1 nsrp1 Rest Rest mettl16 mettl16 ythdc1 ythdc1 CELF2-2 CELF2-2 RBM38 RBM38 LOC111838760 LOC111838760 CELF2 CELF2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
prpf19Pre-mRNA processing factor 19. (505 aa)
LOC111850394RNA binding motif protein 24b. (231 aa)
LOC111853522RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (172 aa)
sf3b4Splicing factor 3b, subunit 4. (399 aa)
ENSPKIP00000003236Uncharacterized protein. (125 aa)
ENSPKIP00000005610RRM domain-containing protein. (184 aa)
LOC111856763RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events. (343 aa)
SRSF7Uncharacterized protein. (236 aa)
ENSPKIP00000006485WT1 associated protein. (173 aa)
RBM38-2RNA binding motif protein 38. (228 aa)
LOC111835034RNA binding motif protein X-linked. (375 aa)
Celf4CUGBP, Elav-like family member 4. (502 aa)
ENSPKIP00000040471Serine and arginine rich splicing factor 7b. (378 aa)
C1qbpComplement component 1, q subcomponent binding protein. (286 aa)
RBM20RNA binding motif protein 20. (1132 aa)
RBM39RNA binding motif protein 39a. (544 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
rbm7RNA binding motif protein 7. (251 aa)
ENSPKIP00000037833Ribonucleoprotein, PTB-binding 1. (320 aa)
nup98Nucleoporin 98. (1852 aa)
snw1SNW domain containing 1. (536 aa)
LOC111855993U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (497 aa)
ENSPKIP00000035519STAR_dimer domain-containing protein. (78 aa)
FXR1FMR1 autosomal homolog 1. (647 aa)
ENSPKIP00000034685Ribonucleoprotein, PTB-binding 2. (425 aa)
RBM15RNA binding motif protein 15. (813 aa)
smu1SMU1 DNA replication regulator and spliceosomal factor b. (513 aa)
LOC111859084Y box binding protein 1. (378 aa)
Ybx1Y box binding protein 1. (401 aa)
celf1Cugbp, Elav-like family member 1. (479 aa)
fam172aFamily with sequence similarity 172 member A. (452 aa)
tra2aTransformer 2 alpha homolog. (291 aa)
LOC111854644Poly-U binding splicing factor b. (525 aa)
ENSPKIP00000031762Splicing factor 1. (391 aa)
LOC111853356RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (384 aa)
Khdrbs1KH domain containing, RNA binding, signal transduction associated 1a. (342 aa)
LOC111834942Mago homolog, exon junction complex subunit. (147 aa)
LOC111836699Cugbp, Elav-like family member 5b. (520 aa)
ENSPKIP00000029706RNA binding protein fox-1 homolog 2; RNA-binding protein that regulates alternative splicing events. (346 aa)
LOC111848348QKI, KH domain containing, RNA binding 2. (345 aa)
LOC111853312Cugbp, Elav-like family member 3b. (457 aa)
cirbpCold inducible RNA binding protein a. (190 aa)
rbfox3RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events. (438 aa)
Rbm15bRNA binding motif protein 15B. (569 aa)
tra2bTransformer 2 beta homolog. (300 aa)
LOC111850867RNA binding protein fox-1 homolog 1; RNA-binding protein that regulates alternative splicing events. (429 aa)
ENSPKIP00000027533RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (235 aa)
srrm4Serine/arginine repetitive matrix 4. (583 aa)
acin1Uncharacterized protein. (1807 aa)
LOC111859646QKI, KH domain containing, RNA binding a. (342 aa)
jmjd6Jumonji domain containing 6, arginine demethylase and lysine hydroxylase. (403 aa)
sfswapSplicing factor SWAP. (934 aa)
ENSPKIP00000025458Si:dkey-221l4.10. (115 aa)
srrm1Serine/arginine repetitive matrix 1. (878 aa)
LOC111844059Serine and arginine rich splicing factor 7a. (281 aa)
LOC111845381RRM domain-containing protein. (326 aa)
DDX17DEAD-box helicase 17; Belongs to the DEAD box helicase family. (672 aa)
dazap1DAZ associated protein 1. (437 aa)
LOC111843288DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family. (622 aa)
LOC111844699Uncharacterized protein. (507 aa)
ENSPKIP00000023921RNA binding motif protein 10. (953 aa)
zc3h10Zinc finger CCCH-type containing 10. (557 aa)
LOC111837706Apoptotic chromatin condensation inducer 1b. (1439 aa)
ENSPKIP00000023095RRM domain-containing protein. (518 aa)
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (611 aa)
LOC111844047Neuro-oncological ventral antigen 2. (498 aa)
MagohUncharacterized protein. (175 aa)
LOC111844735Serine and arginine rich splicing factor 3a. (171 aa)
LOC111834077Poly-U binding splicing factor a. (535 aa)
LOC111848218Si:dkey-205h23.2. (542 aa)
LOC111840052Uncharacterized protein. (1553 aa)
ENSPKIP00000017741Qua1 domain-containing protein. (84 aa)
rbm25RNA binding motif protein 25b. (825 aa)
LOC111855036U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (164 aa)
HMX2H6 family homeobox 2. (267 aa)
LOC111855045Uncharacterized protein. (833 aa)
ENSPKIP00000016472QKI, KH domain containing, RNA binding b. (306 aa)
nclNucleolin. (745 aa)
LOC111845294Uncharacterized protein; Belongs to the DEAD box helicase family. (677 aa)
KHDRBS3KH RNA binding domain containing, signal transduction associated 3. (344 aa)
LOC111848172Fragile X mental retardation, autosomal homolog 1. (684 aa)
sap18Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins. (153 aa)
rbm24RNA binding motif protein 24a. (237 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (159 aa)
fmr1Fragile X mental retardation 1. (642 aa)
WTAPUncharacterized protein. (219 aa)
ENSPKIP00000007696La ribonucleoprotein domain family, member 7. (580 aa)
LOC111848696Uncharacterized protein. (513 aa)
LOC111849985Serine and arginine rich splicing factor 9. (276 aa)
ENSPKIP00000009133U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (560 aa)
CIRBPRNA binding motif protein 3. (148 aa)
ENSPKIP00000009634Uncharacterized protein. (110 aa)
ENSPKIP00000000214RRM domain-containing protein. (168 aa)
LOC111857255RNA binding motif protein 11. (222 aa)
ENSPKIP00000000609Uncharacterized protein. (576 aa)
LOC111840998Ribonucleoprotein, PTB-binding 2. (800 aa)
ENSPKIP00000000848RNA binding protein fox-1 homolog 1; RNA-binding protein that regulates alternative splicing events. (334 aa)
LOC111847999Uncharacterized protein. (490 aa)
LOC111840548RNA binding motif protein 6. (1333 aa)
rbmxRNA binding motif protein X-linked. (381 aa)
ENSPKIP00000009954Uncharacterized protein. (254 aa)
LOC111840563RNA binding motif protein 5. (857 aa)
ENSPKIP00000009674KH domain containing, RNA binding, signal transduction associated 1b. (352 aa)
ENSPKIP00000009645RRM domain-containing protein. (130 aa)
ENSPKIP00000009624RRM domain-containing protein. (124 aa)
NOVA1NOVA alternative splicing regulator 1. (489 aa)
srsf3RRM domain-containing protein. (259 aa)
ENSPKIP00000013029RRM domain-containing protein. (89 aa)
ENSPKIP00000012344Uncharacterized protein. (241 aa)
nsrp1Nuclear speckle splicing regulatory protein 1. (459 aa)
RestRE1-silencing transcription factor. (1088 aa)
mettl16U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...] (549 aa)
ythdc1YTH domain containing 1. (714 aa)
CELF2-2CUGBP Elav-like family member 2. (531 aa)
RBM38RNA binding motif protein 38. (242 aa)
LOC111838760Fragile X mental retardation, autosomal homolog 2. (668 aa)
CELF2CUGBP Elav-like family member 2. (538 aa)
Your Current Organism:
Paramormyrops kingsleyae
NCBI taxonomy Id: 1676925
Other names: Brienomyrus kingsleyae, Brienomyrus sp. CAB, Mormyrus kingsleyae, P. kingsleyae, Pollimyrus kingsleyae
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