(13 nodes) RNA polymerase II preinitiation complex assembly network (Paramormyrops kingsleyae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Gtf2b	General transcription factor IIB. (321 aa)
	taf12	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (165 aa)
	taf11	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (206 aa)
	LOC111838730	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto. (956 aa)
	ENSPKIP00000011046	TATA-box binding protein associated factor 3. (868 aa)
	gtf2a2	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (134 aa)
	LOC111848121	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (360 aa)
	dr1	Down-regulator of transcription 1. (175 aa)
	taf6	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (648 aa)
	taf10	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (232 aa)
	ENSPKIP00000035862	Transcription initiation factor TFIID subunit. (1853 aa)
	taf13	TATA-box binding protein associated factor 13. (124 aa)
	taf6l	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (646 aa)

Your Current Organism:

Paramormyrops kingsleyae

NCBI taxonomy Id: 1676925
Other names: Brienomyrus kingsleyae, Brienomyrus sp. CAB, Mormyrus kingsleyae, P. kingsleyae, Pollimyrus kingsleyae

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPKIP00000011046	ENSPKIP00000035862	ENSPKIP00000011046	ENSPKIP00000035862	TATA-box binding protein associated factor 3.	Transcription initiation factor TFIID subunit.	0.965
ENSPKIP00000011046	Gtf2b	ENSPKIP00000011046	ENSPKIP00000017868	TATA-box binding protein associated factor 3.	General transcription factor IIB.	0.897
ENSPKIP00000011046	LOC111848121	ENSPKIP00000011046	ENSPKIP00000014046	TATA-box binding protein associated factor 3.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.952
ENSPKIP00000011046	gtf2a2	ENSPKIP00000011046	ENSPKIP00000013931	TATA-box binding protein associated factor 3.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.852
ENSPKIP00000011046	taf10	ENSPKIP00000011046	ENSPKIP00000032448	TATA-box binding protein associated factor 3.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.973
ENSPKIP00000011046	taf11	ENSPKIP00000011046	ENSPKIP00000005644	TATA-box binding protein associated factor 3.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.973
ENSPKIP00000011046	taf12	ENSPKIP00000011046	ENSPKIP00000003857	TATA-box binding protein associated factor 3.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.965
ENSPKIP00000011046	taf13	ENSPKIP00000011046	ENSPKIP00000037238	TATA-box binding protein associated factor 3.	TATA-box binding protein associated factor 13.	0.965
ENSPKIP00000011046	taf6	ENSPKIP00000011046	ENSPKIP00000023149	TATA-box binding protein associated factor 3.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.957
ENSPKIP00000011046	taf6l	ENSPKIP00000011046	ENSPKIP00000037921	TATA-box binding protein associated factor 3.	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.922
ENSPKIP00000035862	ENSPKIP00000011046	ENSPKIP00000035862	ENSPKIP00000011046	Transcription initiation factor TFIID subunit.	TATA-box binding protein associated factor 3.	0.965
ENSPKIP00000035862	Gtf2b	ENSPKIP00000035862	ENSPKIP00000017868	Transcription initiation factor TFIID subunit.	General transcription factor IIB.	0.987
ENSPKIP00000035862	LOC111838730	ENSPKIP00000035862	ENSPKIP00000010165	Transcription initiation factor TFIID subunit.	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto.	0.965
ENSPKIP00000035862	LOC111848121	ENSPKIP00000035862	ENSPKIP00000014046	Transcription initiation factor TFIID subunit.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSPKIP00000035862	gtf2a2	ENSPKIP00000035862	ENSPKIP00000013931	Transcription initiation factor TFIID subunit.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.955
ENSPKIP00000035862	taf10	ENSPKIP00000035862	ENSPKIP00000032448	Transcription initiation factor TFIID subunit.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.999
ENSPKIP00000035862	taf11	ENSPKIP00000035862	ENSPKIP00000005644	Transcription initiation factor TFIID subunit.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSPKIP00000035862	taf12	ENSPKIP00000035862	ENSPKIP00000003857	Transcription initiation factor TFIID subunit.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSPKIP00000035862	taf13	ENSPKIP00000035862	ENSPKIP00000037238	Transcription initiation factor TFIID subunit.	TATA-box binding protein associated factor 13.	0.999
ENSPKIP00000035862	taf6	ENSPKIP00000035862	ENSPKIP00000023149	Transcription initiation factor TFIID subunit.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999