65 items (Paramormyrops kingsleyae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rprd1a	Regulation of nuclear pre-mRNA domain containing 1A. (314 aa)
	LOC111836620	RNA polymerase II subunit E. (222 aa)
	taf5l	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (596 aa)
	cinp	Cyclin-dependent kinase 2 interacting protein. (230 aa)
	tbp	TATA box binding protein. (303 aa)
	gtf2e1	General transcription factor IIE, polypeptide 1, alpha. (442 aa)
	pex2	Peroxisomal biogenesis factor 2. (339 aa)
	ENSPKIP00000021454	Uncharacterized protein. (67 aa)
	ENSPKIP00000021292	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1851 aa)
	LOC111842614	General transcription factor IIE, polypeptide 2, beta. (343 aa)
	ENSPKIP00000019679	TAFH domain-containing protein. (886 aa)
	LOC111840082	WD repeat domain 47. (903 aa)
	rpap2	RNA polymerase II associated protein 2. (743 aa)
	gtf2f1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (534 aa)
	taf4	TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor. (1003 aa)
	rtf1	RTF1 homolog, Paf1/RNA polymerase II complex component. (678 aa)
	ENSPKIP00000015972	Uncharacterized protein. (70 aa)
	Gtf2a1l	General transcription factor IIA, 1-like. (433 aa)
	taf5	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (755 aa)
	ccnh	Cyclin H; Belongs to the cyclin family. (325 aa)
	ercc3	Excision repair cross-complementation group 3. (786 aa)
	gtf2a2	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (134 aa)
	polr2i	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	Polr2g	Polymerase (RNA) II (DNA directed) polypeptide G-like. (198 aa)
	LOC111832695	Si:dkey-219c3.2. (1111 aa)
	LOC111853074	TFIIE beta domain-containing protein. (393 aa)
	polr2b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1231 aa)
	gtf2h1	General transcription factor IIH, polypeptide 1. (544 aa)
	ENSPKIP00000011046	TATA-box binding protein associated factor 3. (868 aa)
	LOC111838730	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto. (956 aa)
	LOC111860494	RNA polymerase II subunit E. (210 aa)
	cdk20	Cyclin-dependent kinase 20; Belongs to the protein kinase superfamily. (347 aa)
	LOC111842294	Regulation of nuclear pre-mRNA domain containing 1B. (330 aa)
	gtf2h5	General transcription factor IIH, polypeptide 5. (71 aa)
	ENSPKIP00000008065	General transcription factor IIH, polypeptide 3. (293 aa)
	recql5	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (997 aa)
	ENSPKIP00000006736	Uncharacterized protein. (45 aa)
	ctr9	CTR9 homolog, Paf1/RNA polymerase II complex component. (1206 aa)
	ENSPKIP00000006022	Uncharacterized protein. (355 aa)
	taf11	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (206 aa)
	paf1	PAF1 homolog, Paf1/RNA polymerase II complex component. (531 aa)
	Leo1	LEO1 homolog, Paf1/RNA polymerase II complex component. (703 aa)
	taf2	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (1223 aa)
	mnat1	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (315 aa)
	cdc73	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (529 aa)
	wdr47	WD repeat domain 47a. (910 aa)
	taf4b	TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor. (804 aa)
	cdk7	Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (348 aa)
	ENSPKIP00000037728	CID domain-containing protein. (78 aa)
	ENSPKIP00000037701	Uncharacterized protein. (691 aa)
	taf13	TATA-box binding protein associated factor 13. (124 aa)
	supt3h	SPT3 homolog, SAGA and STAGA complex component. (402 aa)
	taf8	TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (308 aa)
	ENSPKIP00000035862	Transcription initiation factor TFIID subunit. (1853 aa)
	gtf2h2c	General transcription factor IIH subunit. (407 aa)
	Gtf2f2	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (276 aa)
	polr2j	RNA_pol_L_2 domain-containing protein. (145 aa)
	ENSPKIP00000032842	General transcription factor IIA, 1. (233 aa)
	Wdr61	WD repeat domain 61. (356 aa)
	LOC111839041	SH3-binding domain protein 5-like, a. (483 aa)
	polr2d	Polymerase (RNA) II (DNA directed) polypeptide D. (144 aa)
	gtf2h4	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (463 aa)
	LOC111842829	General transcription factor IIH, polypeptide 4. (468 aa)
	RPRD2	Regulation of nuclear pre-mRNA domain containing 2b. (1353 aa)
	RPRD1B	Regulation of nuclear pre-mRNA domain containing 1B. (330 aa)

Your Current Organism:

Paramormyrops kingsleyae

NCBI taxonomy Id: 1676925
Other names: Brienomyrus kingsleyae, Brienomyrus sp. CAB, Mormyrus kingsleyae, P. kingsleyae, Pollimyrus kingsleyae

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPKIP00000006022	ENSPKIP00000021292	ENSPKIP00000006022	ENSPKIP00000021292	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.820
ENSPKIP00000006022	ENSPKIP00000021454	ENSPKIP00000006022	ENSPKIP00000021454	Uncharacterized protein.	Uncharacterized protein.	0.634
ENSPKIP00000006022	LOC111836620	ENSPKIP00000006022	ENSPKIP00000027631	Uncharacterized protein.	RNA polymerase II subunit E.	0.675
ENSPKIP00000006022	LOC111842294	ENSPKIP00000006022	ENSPKIP00000008333	Uncharacterized protein.	Regulation of nuclear pre-mRNA domain containing 1B.	0.494
ENSPKIP00000006022	LOC111860494	ENSPKIP00000006022	ENSPKIP00000008773	Uncharacterized protein.	RNA polymerase II subunit E.	0.675
ENSPKIP00000006022	Polr2g	ENSPKIP00000006022	ENSPKIP00000013477	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide G-like.	0.824
ENSPKIP00000006022	RPRD1B	ENSPKIP00000006022	ENSPKIP00000029032	Uncharacterized protein.	Regulation of nuclear pre-mRNA domain containing 1B.	0.494
ENSPKIP00000006022	polr2b	ENSPKIP00000006022	ENSPKIP00000012104	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.889
ENSPKIP00000006022	polr2d	ENSPKIP00000006022	ENSPKIP00000031841	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide D.	0.812
ENSPKIP00000006022	polr2i	ENSPKIP00000006022	ENSPKIP00000013788	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.825
ENSPKIP00000006022	polr2j	ENSPKIP00000006022	ENSPKIP00000033221	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.680
ENSPKIP00000006022	recql5	ENSPKIP00000006022	ENSPKIP00000007259	Uncharacterized protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.619
ENSPKIP00000006022	rpap2	ENSPKIP00000006022	ENSPKIP00000018754	Uncharacterized protein.	RNA polymerase II associated protein 2.	0.690
ENSPKIP00000006022	rprd1a	ENSPKIP00000006022	ENSPKIP00000004972	Uncharacterized protein.	Regulation of nuclear pre-mRNA domain containing 1A.	0.494
ENSPKIP00000006736	ENSPKIP00000008065	ENSPKIP00000006736	ENSPKIP00000008065	Uncharacterized protein.	General transcription factor IIH, polypeptide 3.	0.851
ENSPKIP00000006736	ENSPKIP00000011046	ENSPKIP00000006736	ENSPKIP00000011046	Uncharacterized protein.	TATA-box binding protein associated factor 3.	0.729
ENSPKIP00000006736	ENSPKIP00000019679	ENSPKIP00000006736	ENSPKIP00000019679	Uncharacterized protein.	TAFH domain-containing protein.	0.753
ENSPKIP00000006736	ENSPKIP00000021292	ENSPKIP00000006736	ENSPKIP00000021292	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.873
ENSPKIP00000006736	ENSPKIP00000021454	ENSPKIP00000006736	ENSPKIP00000021454	Uncharacterized protein.	Uncharacterized protein.	0.851
ENSPKIP00000006736	ENSPKIP00000032842	ENSPKIP00000006736	ENSPKIP00000032842	Uncharacterized protein.	General transcription factor IIA, 1.	0.900