(4 nodes) High mobility group protein HMGA network (Paramormyrops kingsleyae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hmga2	High mobility group AT-hook 2. (107 aa)
	Hmga1	Uncharacterized protein. (126 aa)
	ENSPKIP00000014547	Uncharacterized protein. (108 aa)
	ENSPKIP00000017505	Uncharacterized protein. (100 aa)

Your Current Organism:

Paramormyrops kingsleyae

NCBI taxonomy Id: 1676925
Other names: Brienomyrus kingsleyae, Brienomyrus sp. CAB, Mormyrus kingsleyae, P. kingsleyae, Pollimyrus kingsleyae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPKIP00000014547	ENSPKIP00000017505	ENSPKIP00000014547	ENSPKIP00000017505	Uncharacterized protein.	Uncharacterized protein.	0.567
ENSPKIP00000014547	Hmga1	ENSPKIP00000014547	ENSPKIP00000014202	Uncharacterized protein.	Uncharacterized protein.	0.552
ENSPKIP00000017505	ENSPKIP00000014547	ENSPKIP00000017505	ENSPKIP00000014547	Uncharacterized protein.	Uncharacterized protein.	0.567
ENSPKIP00000017505	hmga2	ENSPKIP00000017505	ENSPKIP00000004690	Uncharacterized protein.	High mobility group AT-hook 2.	0.569
Hmga1	ENSPKIP00000014547	ENSPKIP00000014202	ENSPKIP00000014547	Uncharacterized protein.	Uncharacterized protein.	0.552
Hmga1	hmga2	ENSPKIP00000014202	ENSPKIP00000004690	Uncharacterized protein.	High mobility group AT-hook 2.	0.552
hmga2	ENSPKIP00000017505	ENSPKIP00000004690	ENSPKIP00000017505	High mobility group AT-hook 2.	Uncharacterized protein.	0.569
hmga2	Hmga1	ENSPKIP00000004690	ENSPKIP00000014202	High mobility group AT-hook 2.	Uncharacterized protein.	0.552