STRINGSTRING
LOC111861157 LOC111861157 Ddb1 Ddb1 UBB UBB COPS6 COPS6 prpf19 prpf19 ENSPKIP00000001669 ENSPKIP00000001669 ENSPKIP00000001684 ENSPKIP00000001684 COPS2 COPS2 tcea3 tcea3 pold1 pold1 ZNF830 ZNF830 ino80 ino80 rps27a rps27a Xrcc1 Xrcc1 LOC111858065 LOC111858065 chd1l chd1l Ino80c Ino80c LOC111856749 LOC111856749 rfc4 rfc4 rnf111 rnf111 polr2h polr2h ENSPKIP00000006756 ENSPKIP00000006756 yy1 yy1 LOC111834205 LOC111834205 pole2 pole2 ENSPKIP00000008065 ENSPKIP00000008065 gtf2h5 gtf2h5 LOC111860494 LOC111860494 isy1 isy1 actr8 actr8 Pole Pole cops3 cops3 ruvbl1 ruvbl1 ube2n ube2n cops4 cops4 ENSPKIP00000011404 ENSPKIP00000011404 pole3 pole3 gtf2h1 gtf2h1 polr2b polr2b pole4 pole4 ENSPKIP00000012512 ENSPKIP00000012512 ENSPKIP00000013319 ENSPKIP00000013319 Polr2g Polr2g PCNA PCNA polr2i polr2i ercc3 ercc3 pold2 pold2 meiob meiob ccnh ccnh LOC111846432 LOC111846432 LOC111832811 LOC111832811 ube2v2 ube2v2 LOC111834636 LOC111834636 polr2f polr2f ENSPKIP00000016002 ENSPKIP00000016002 Bivm Bivm kxd1 kxd1 LOC111840804 LOC111840804 Ddb2 Ddb2 phf3 phf3 RBX1 RBX1 LOC111845232 LOC111845232 Aqr Aqr SUMO3 SUMO3 mcrs1 mcrs1 rfc1 rfc1 rpa2 rpa2 parp3 parp3 Atad5 Atad5 polr2c polr2c cetn3 cetn3 ENSPKIP00000021292 ENSPKIP00000021292 ENSPKIP00000021454 ENSPKIP00000021454 ENSPKIP00000021462 ENSPKIP00000021462 uba52 uba52 parp1 parp1 RAD23B RAD23B uvssa uvssa actr5 actr5 ercc2 ercc2 ENSPKIP00000024136 ENSPKIP00000024136 ercc1 ercc1 parp2 parp2 ENSPKIP00000024903 ENSPKIP00000024903 ENSPKIP00000025031 ENSPKIP00000025031 rpa1 rpa1 LOC111858299 LOC111858299 ercc5 ercc5 ENSPKIP00000026563 ENSPKIP00000026563 ENSPKIP00000026663 ENSPKIP00000026663 LOC111858369 LOC111858369 rfc5 rfc5 ENSPKIP00000026851 ENSPKIP00000026851 ENSPKIP00000027017 ENSPKIP00000027017 cops5 cops5 Ppp1r42 Ppp1r42 nrde2 nrde2 LOC111833512 LOC111833512 LOC111851430 LOC111851430 LOC111836620 LOC111836620 Cul4a Cul4a EP300 EP300 ppie ppie ENSPKIP00000028015 ENSPKIP00000028015 GPS1 GPS1 LOC111860379 LOC111860379 tceanc2 tceanc2 LOC111845463 LOC111845463 rpa3 rpa3 ENSPKIP00000029116 ENSPKIP00000029116 Tcea1 Tcea1 lig3 lig3 gtf2h4 gtf2h4 LOC111837275 LOC111837275 cops8 cops8 tfpt tfpt ENSPKIP00000031676 ENSPKIP00000031676 polr2d polr2d ENSPKIP00000032000 ENSPKIP00000032000 LOC111849321 LOC111849321 polr2j polr2j LOC111843688 LOC111843688 LOC111856488 LOC111856488 cul4b cul4b xpc xpc COPS7B COPS7B ENSPKIP00000035697 ENSPKIP00000035697 gtf2h2c gtf2h2c xab2 xab2 ENSPKIP00000036487 ENSPKIP00000036487 ENSPKIP00000036698 ENSPKIP00000036698 Pold4 Pold4 rfc2 rfc2 polk polk Ino80b Ino80b cdk7 cdk7 Lig1 Lig1 pias1 pias1 ercc4 ercc4 rfc3 rfc3 nfrkb nfrkb INO80D INO80D ercc6 ercc6 Polr2l Polr2l LOC111845463-2 LOC111845463-2 rpap3 rpap3 LOC111844327 LOC111844327 mnat1 mnat1 ercc8 ercc8 usp7 usp7 Xpa Xpa LOC111846660 LOC111846660
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
LOC111861157Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
Ddb1Damage-specific DNA binding protein 1. (1142 aa)
UBBUbiquitin B. (230 aa)
COPS6COP9 signalosome subunit 6. (317 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
ENSPKIP00000001669Transcription elongation factor A (SII), 2. (186 aa)
ENSPKIP00000001684TFIIS N-terminal domain-containing protein. (79 aa)
COPS2COP9 signalosome subunit 2. (469 aa)
tcea3Transcription elongation factor A (SII), 3. (571 aa)
pold1DNA polymerase. (1105 aa)
ZNF830Zinc finger protein 830. (350 aa)
ino80INO80 complex ATPase subunit. (1516 aa)
rps27aRibosomal protein S27a. (156 aa)
Xrcc1X-ray repair complementing defective repair in Chinese hamster cells 1. (617 aa)
LOC111858065Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (618 aa)
chd1lChromodomain helicase DNA binding protein 1-like. (1001 aa)
Ino80cINO80 complex subunit C. (247 aa)
LOC111856749G protein pathway suppressor 1. (487 aa)
rfc4Replication factor C (activator 1) 4. (357 aa)
rnf111Ring finger protein 111. (993 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
ENSPKIP00000006756Ubiquitin carboxyl-terminal hydrolase. (760 aa)
yy1YY1 transcription factor b. (367 aa)
LOC111834205Small ubiquitin-related modifier. (95 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (527 aa)
ENSPKIP00000008065General transcription factor IIH, polypeptide 3. (293 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (71 aa)
LOC111860494RNA polymerase II subunit E. (210 aa)
isy1ISY1 splicing factor homolog. (284 aa)
actr8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (628 aa)
PoleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2251 aa)
cops3COP9 signalosome subunit 3. (424 aa)
ruvbl1RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
ube2nUbiquitin conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (182 aa)
cops4COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (461 aa)
ENSPKIP00000011404Polymerase (DNA-directed), delta 3, accessory subunit. (395 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (148 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (544 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1231 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (122 aa)
ENSPKIP00000012512Uncharacterized protein. (102 aa)
ENSPKIP00000013319VWFA domain-containing protein. (262 aa)
Polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (198 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
ercc3Excision repair cross-complementation group 3. (786 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (470 aa)
meiobMethionine sulfoxide reductase B1b. (468 aa)
ccnhCyclin H; Belongs to the cyclin family. (325 aa)
LOC111846432Ubiquitin-conjugating enzyme E2Ia; Belongs to the ubiquitin-conjugating enzyme family. (157 aa)
LOC111832811Uncharacterized protein. (171 aa)
ube2v2Ubiquitin-conjugating enzyme E2 variant 2. (180 aa)
LOC111834636COP9 constitutive photomorphogenic homolog subunit 7A. (268 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
ENSPKIP00000016002Uncharacterized protein. (385 aa)
BivmBasic, immunoglobulin-like variable motif containing. (497 aa)
kxd1KxDL motif containing 1. (178 aa)
LOC111840804Small ubiquitin-related modifier. (101 aa)
Ddb2Damage-specific DNA binding protein 2. (453 aa)
phf3PHD finger protein 3. (1801 aa)
RBX1RING-type domain-containing protein. (108 aa)
LOC111845232Uncharacterized protein. (2683 aa)
AqrAquarius intron-binding spliceosomal factor. (1287 aa)
SUMO3Small ubiquitin-related modifier. (106 aa)
mcrs1Microspherule protein 1. (473 aa)
rfc1Replication factor C subunit 1. (1155 aa)
rpa2Replication protein A2. (339 aa)
parp3Poly [ADP-ribose] polymerase. (531 aa)
Atad5ATPase family AAA domain containing 5a. (1761 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
cetn3Centrin 3. (181 aa)
ENSPKIP00000021292DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1851 aa)
ENSPKIP00000021454Uncharacterized protein. (67 aa)
ENSPKIP00000021462Ubiquitin-like domain-containing protein. (159 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1011 aa)
RAD23BRAD23 homolog B, nucleotide excision repair protein. (384 aa)
uvssaUV-stimulated scaffold protein A. (715 aa)
actr5Actin related protein 5; Belongs to the actin family. (601 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
ENSPKIP00000024136UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (188 aa)
ercc1Excision repair cross-complementation group 1. (325 aa)
parp2Poly [ADP-ribose] polymerase. (572 aa)
ENSPKIP00000024903Uncharacterized protein. (319 aa)
ENSPKIP00000025031Uncharacterized protein. (171 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (610 aa)
LOC111858299Small ubiquitin like modifier 1. (126 aa)
ercc5Excision repair cross-complementation group 5. (1172 aa)
ENSPKIP00000026563VIT domain-containing protein. (519 aa)
ENSPKIP00000026663Ubiquitin specific peptidase 40; Belongs to the peptidase C19 family. (1189 aa)
LOC111858369Small ubiquitin-related modifier. (94 aa)
rfc5Replication factor C (activator 1) 5. (336 aa)
ENSPKIP00000026851Ring-box 1, E3 ubiquitin protein ligase. (112 aa)
ENSPKIP00000027017Chemokine (C-C motif) ligand 44. (257 aa)
cops5COP9 signalosome subunit 5. (334 aa)
Ppp1r42Protein phosphatase 1, regulatory subunit 42. (252 aa)
nrde2NRDE-2, necessary for RNA interference, domain containing. (1140 aa)
LOC111833512RAD23 homolog A, nucleotide excision repair protein a. (349 aa)
LOC111851430Ubiquitin-like domain-containing protein. (77 aa)
LOC111836620RNA polymerase II subunit E. (222 aa)
Cul4aCullin 4A; Belongs to the cullin family. (750 aa)
EP300E1A binding protein p300. (2557 aa)
ppieUncharacterized protein. (367 aa)
ENSPKIP00000028015RAD23 homolog B, nucleotide excision repair protein. (413 aa)
GPS1G protein pathway suppressor 1. (487 aa)
LOC111860379RAD23 homolog A, nucleotide excision repair protein b. (428 aa)
tceanc2Transcription elongation factor A (SII) N-terminal and central domain containing 2. (207 aa)
LOC111845463Actin, beta 2. (375 aa)
rpa3Replication protein A3. (123 aa)
ENSPKIP00000029116INO80 complex subunit Da. (903 aa)
Tcea1Transcription elongation factor A (SII), 1. (371 aa)
lig3DNA ligase. (1016 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (463 aa)
LOC111837275Si:ch73-290k24.6. (437 aa)
cops8COP9 signalosome subunit 8. (191 aa)
tfptTCF3 (E2A) fusion partner. (225 aa)
ENSPKIP00000031676Si:ch73-1a9.3. (85 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (144 aa)
ENSPKIP00000032000Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (612 aa)
LOC111849321Potassium channel tetramerization domain containing 2. (260 aa)
polr2jRNA_pol_L_2 domain-containing protein. (145 aa)
LOC111843688BTB domain-containing protein. (532 aa)
LOC111856488Ubiquitin-like domain-containing protein. (95 aa)
cul4bCullin 4B; Belongs to the cullin family. (858 aa)
xpcXeroderma pigmentosum, complementation group C. (870 aa)
COPS7BCOP9 signalosome subunit 7B. (210 aa)
ENSPKIP00000035697Von Willebrand factor A domain containing 5B2. (1027 aa)
gtf2h2cGeneral transcription factor IIH subunit. (407 aa)
xab2XPA binding protein 2. (850 aa)
ENSPKIP00000036487Zgc:110224. (404 aa)
ENSPKIP00000036698Uncharacterized protein. (186 aa)
Pold4Si:dkey-28b4.7. (121 aa)
rfc2Replication factor C (activator 1) 2. (351 aa)
polkPolymerase (DNA directed) kappa. (894 aa)
Ino80bINO80 complex subunit B. (320 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (348 aa)
Lig1DNA ligase. (964 aa)
pias1Protein inhibitor of activated STAT, 1b. (656 aa)
ercc4Excision repair cross-complementation group 4. (893 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
nfrkbNuclear factor related to kappaB binding protein. (1295 aa)
INO80DINO80 complex subunit D. (993 aa)
ercc6Excision repair cross-complementation group 6. (1376 aa)
Polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (80 aa)
LOC111845463-2Actin, beta 2. (382 aa)
rpap3RNA polymerase II associated protein 3. (655 aa)
LOC111844327UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (315 aa)
ercc8Excision repair cross-complementation group 8. (400 aa)
usp7Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (1106 aa)
XpaXeroderma pigmentosum, complementation group A. (272 aa)
LOC111846660COP9 signalosome subunit 2. (456 aa)
Your Current Organism:
Paramormyrops kingsleyae
NCBI taxonomy Id: 1676925
Other names: Brienomyrus kingsleyae, Brienomyrus sp. CAB, Mormyrus kingsleyae, P. kingsleyae, Pollimyrus kingsleyae
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