(28 nodes) Mixed, incl. Tyrosine metabolism, and D-amino-acid dehydrogenase activity network (Massilia sp. NR 41)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKU20189.1	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (180 aa)
	AKU20190.1	2-keto-4-pentenoate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	AKU20191.1	Maleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
	AKU20455.1	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)
	AKU20550.1	Amino acid dehydrogenase; Catalyzes the oxidative deamination of D-amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)
	AKU21013.1	2-oxoacid ferredoxin oxidoreductase; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; Derived by automated computational analysis using gene prediction method: Protein Homology. (1163 aa)
	AKU21182.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
	dadA	Amino acid dehydrogenase; Oxidative deamination of D-amino acids. (429 aa)
	AKU24794.1	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
	AKU24795.1	Hydroxyproline-2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the proline racemase family. (311 aa)
	AKU21567.1	D-amino acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)
	AKU21568.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa)
	AKU21569.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
	AKU21570.1	Dihydrodipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DapA family. (303 aa)
	orn	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. (176 aa)
	AKU21944.1	Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)
	AKU24838.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa)
	AKU22311.1	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (107 aa)
	AKU22956.1	Indolepyruvate ferredoxin oxidoreductase; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; Derived by automated computational analysis using gene prediction method: Protein Homology. (1192 aa)
	AKU22957.1	4-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)
	AKU23041.1	Indolepyruvate ferredoxin oxidoreductase; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; Derived by automated computational analysis using gene prediction method: Protein Homology. (1187 aa)
	AKU23334.1	Amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
	AKU23752.1	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (167 aa)
	AKU24046.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)
	AKU25125.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
	AKU24241.1	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
	AKU24485.1	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
	AKU24550.1	Aromatic amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)

Your Current Organism:

Massilia sp. NR 41

NCBI taxonomy Id: 1678028
Other names: M. sp. NR 4-1, Massilia sp. NR 4-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKU20189.1	AKU20190.1	ACZ75_00240	ACZ75_00245	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-keto-4-pentenoate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
AKU20189.1	AKU20191.1	ACZ75_00240	ACZ75_00250	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Maleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
AKU20189.1	AKU22957.1	ACZ75_00240	ACZ75_17350	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.539
AKU20190.1	AKU20189.1	ACZ75_00245	ACZ75_00240	2-keto-4-pentenoate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
AKU20190.1	AKU20191.1	ACZ75_00245	ACZ75_00250	2-keto-4-pentenoate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Maleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AKU20190.1	AKU22957.1	ACZ75_00245	ACZ75_17350	2-keto-4-pentenoate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.863
AKU20190.1	AKU24241.1	ACZ75_00245	ACZ75_25055	2-keto-4-pentenoate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
AKU20190.1	AKU24485.1	ACZ75_00245	ACZ75_26490	2-keto-4-pentenoate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AKU20191.1	AKU20189.1	ACZ75_00250	ACZ75_00240	Maleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
AKU20191.1	AKU20190.1	ACZ75_00250	ACZ75_00245	Maleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-keto-4-pentenoate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AKU20191.1	AKU22957.1	ACZ75_00250	ACZ75_17350	Maleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.894
AKU20191.1	AKU24241.1	ACZ75_00250	ACZ75_25055	Maleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.894
AKU20191.1	AKU24485.1	ACZ75_00250	ACZ75_26490	Maleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
AKU20191.1	AKU24838.1	ACZ75_00250	ACZ75_11175	Maleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
AKU20455.1	AKU21568.1	ACZ75_01880	ACZ75_08910	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
AKU20550.1	AKU21569.1	ACZ75_02465	ACZ75_08915	Amino acid dehydrogenase; Catalyzes the oxidative deamination of D-amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
AKU20550.1	AKU22957.1	ACZ75_02465	ACZ75_17350	Amino acid dehydrogenase; Catalyzes the oxidative deamination of D-amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
AKU20550.1	AKU23334.1	ACZ75_02465	ACZ75_19605	Amino acid dehydrogenase; Catalyzes the oxidative deamination of D-amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
AKU20550.1	AKU24550.1	ACZ75_02465	ACZ75_26860	Amino acid dehydrogenase; Catalyzes the oxidative deamination of D-amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aromatic amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AKU20550.1	dadA	ACZ75_02465	ACZ75_08505	Amino acid dehydrogenase; Catalyzes the oxidative deamination of D-amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid dehydrogenase; Oxidative deamination of D-amino acids.	0.917