(7 nodes) Mixed, incl. ABC-2 membrane transporter-like, and Flavoprotein network (Lysinibacillus sp. ZYM1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KPN93177.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)
	KPN93264.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)
	KPN93178.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	KPN93179.1	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (125 aa)
	KPN93180.1	Sporulation protein, YlmC/YmxH family; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa)
	KPN93181.1	Dipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	spoVFB	Dipicolinate synthase subunit B; Involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)

Your Current Organism:

Lysinibacillus sp. ZYM1

NCBI taxonomy Id: 1681184
Other names: L. sp. ZYM-1, Lysinibacillus sp. ZYM-1

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KPN93177.1	KPN93178.1	AO843_06785	AO843_06795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
KPN93177.1	KPN93179.1	AO843_06785	AO843_06800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
KPN93177.1	KPN93180.1	AO843_06785	AO843_06805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sporulation protein, YlmC/YmxH family; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.523
KPN93177.1	KPN93181.1	AO843_06785	AO843_06810	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
KPN93177.1	KPN93264.1	AO843_06785	AO843_06790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
KPN93177.1	spoVFB	AO843_06785	AO843_06815	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipicolinate synthase subunit B; Involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
KPN93178.1	KPN93177.1	AO843_06795	AO843_06785	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
KPN93178.1	KPN93179.1	AO843_06795	AO843_06800	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
KPN93178.1	KPN93180.1	AO843_06795	AO843_06805	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sporulation protein, YlmC/YmxH family; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
KPN93178.1	KPN93181.1	AO843_06795	AO843_06810	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
KPN93178.1	KPN93264.1	AO843_06795	AO843_06790	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
KPN93178.1	spoVFB	AO843_06795	AO843_06815	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipicolinate synthase subunit B; Involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
KPN93179.1	KPN93177.1	AO843_06800	AO843_06785	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
KPN93179.1	KPN93178.1	AO843_06800	AO843_06795	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
KPN93179.1	KPN93180.1	AO843_06800	AO843_06805	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sporulation protein, YlmC/YmxH family; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
KPN93179.1	KPN93181.1	AO843_06800	AO843_06810	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
KPN93179.1	KPN93264.1	AO843_06800	AO843_06790	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849
KPN93179.1	spoVFB	AO843_06800	AO843_06815	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipicolinate synthase subunit B; Involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
KPN93180.1	KPN93177.1	AO843_06805	AO843_06785	Sporulation protein, YlmC/YmxH family; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.523
KPN93180.1	KPN93178.1	AO843_06805	AO843_06795	Sporulation protein, YlmC/YmxH family; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527