18 items (Pseudomicrostroma glucosiphilum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A316TWM8	JmjC-domain-containing protein. (1044 aa)
	A0A316U2F0	Uncharacterized protein. (686 aa)
	A0A316U6I9	Histone H2B; Belongs to the histone H2B family. (144 aa)
	A0A316U7P2	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	A0A316U8N8	Histone H2A; Belongs to the histone H2A family. (129 aa)
	A0A316U930	Histone-fold-containing protein. (155 aa)
	A0A316U957	Uncharacterized protein. (481 aa)
	A0A316U9C8	Histone H3; Belongs to the histone H3 family. (136 aa)
	A0A316UA22	Uncharacterized protein. (1484 aa)
	A0A316UAJ0	WD40 repeat-like protein. (523 aa)
	A0A316UB89	Uncharacterized protein. (148 aa)
	A0A316UBQ0	WD40 repeat-like protein. (404 aa)
	A0A316UCE1	TPR-like protein. (1166 aa)
	A0A316UCS4	Uncharacterized protein. (1671 aa)
	A0A316UDF7	Histone H3; Belongs to the histone H3 family. (136 aa)
	A0A316UDH4	DUF2236 domain-containing protein. (676 aa)
	A0A316UGG6	WD40 repeat-like protein. (619 aa)
	A0A316UGH3	Zn(2)-C6 fungal-type domain-containing protein. (1059 aa)

Your Current Organism:

Pseudomicrostroma glucosiphilum

NCBI taxonomy Id: 1684307
Other names: CBS 14053, MCA 4718, Microstromatales sp. MCA4718, NRRL 66310, P. glucosiphilum, Rhodotorula sp. MCA 4718

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A316TWM8	A0A316U2F0	JmjC-domain-containing protein.	Uncharacterized protein.	0.562
A0A316TWM8	A0A316U6I9	JmjC-domain-containing protein.	Histone H2B; Belongs to the histone H2B family.	0.885
A0A316TWM8	A0A316U7P2	JmjC-domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.659
A0A316TWM8	A0A316U8N8	JmjC-domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.659
A0A316TWM8	A0A316U930	JmjC-domain-containing protein.	Histone-fold-containing protein.	0.979
A0A316TWM8	A0A316U957	JmjC-domain-containing protein.	Uncharacterized protein.	0.792
A0A316TWM8	A0A316U9C8	JmjC-domain-containing protein.	Histone H3; Belongs to the histone H3 family.	0.979
A0A316TWM8	A0A316UA22	JmjC-domain-containing protein.	Uncharacterized protein.	0.770
A0A316TWM8	A0A316UB89	JmjC-domain-containing protein.	Uncharacterized protein.	0.659
A0A316TWM8	A0A316UBQ0	JmjC-domain-containing protein.	WD40 repeat-like protein.	0.517
A0A316TWM8	A0A316UCE1	JmjC-domain-containing protein.	TPR-like protein.	0.525
A0A316TWM8	A0A316UCS4	JmjC-domain-containing protein.	Uncharacterized protein.	0.825
A0A316TWM8	A0A316UDF7	JmjC-domain-containing protein.	Histone H3; Belongs to the histone H3 family.	0.979
A0A316TWM8	A0A316UDH4	JmjC-domain-containing protein.	DUF2236 domain-containing protein.	0.979
A0A316TWM8	A0A316UGG6	JmjC-domain-containing protein.	WD40 repeat-like protein.	0.517
A0A316TWM8	A0A316UGH3	JmjC-domain-containing protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.435
A0A316U2F0	A0A316TWM8	Uncharacterized protein.	JmjC-domain-containing protein.	0.562
A0A316U2F0	A0A316U6I9	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.693
A0A316U2F0	A0A316U7P2	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.819
A0A316U2F0	A0A316U8N8	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.888