(26 nodes) RNA polymerase III complex, and RNA Polymerase I Transcription Initiation network (Pseudomicrostroma glucosiphilum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

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co-expression

protein homology

Your Input:
	A0A316TZ59	RNA polymerase I-specific transcription initiation factor RRN3. (670 aa)
	A0A316TZ72	RPA43_OB domain-containing protein. (374 aa)
	A0A316TZW6	RBP11-like subunits of RNA polymerase. (162 aa)
	A0A316U2R3	RPOL4c domain-containing protein. (160 aa)
	A0A316U2S2	RNA polymerase Rpb6. (160 aa)
	A0A316U3X6	Uncharacterized protein. (531 aa)
	A0A316U5J8	Uncharacterized protein. (1064 aa)
	A0A316U6B4	Uncharacterized protein. (389 aa)
	A0A316U707	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (109 aa)
	A0A316U719	Uncharacterized protein. (257 aa)
	A0A316U782	Uncharacterized protein. (641 aa)
	A0A316U797	BRF1-domain-containing protein. (850 aa)
	A0A316U7D7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (127 aa)
	A0A316U7J1	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (725 aa)
	A0A316U999	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1132 aa)
	A0A316U9R1	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	A0A316UBJ4	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1280 aa)
	A0A316UBU9	TFIIS central domain-containing protein. (175 aa)
	A0A316UCV3	Uncharacterized protein. (87 aa)
	A0A316UCW8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1402 aa)
	A0A316UD53	Putative 25 kd subunit of DNA-directed RNA polymerases I, II and III. (207 aa)
	A0A316UEF0	RPOLD domain-containing protein. (341 aa)
	A0A316UFG1	Uncharacterized protein. (531 aa)
	A0A316UFI1	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (233 aa)
	A0A316UJ25	Putative DNA-directed RNA polymerase II chain RPB10. (70 aa)
	A0A316UJP6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1803 aa)

Your Current Organism:

Pseudomicrostroma glucosiphilum

NCBI taxonomy Id: 1684307
Other names: CBS 14053, MCA 4718, Microstromatales sp. MCA4718, NRRL 66310, P. glucosiphilum, Rhodotorula sp. MCA 4718

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A316TZ59	A0A316TZ72	RNA polymerase I-specific transcription initiation factor RRN3.	RPA43_OB domain-containing protein.	0.997
A0A316TZ59	A0A316TZW6	RNA polymerase I-specific transcription initiation factor RRN3.	RBP11-like subunits of RNA polymerase.	0.973
A0A316TZ59	A0A316U2S2	RNA polymerase I-specific transcription initiation factor RRN3.	RNA polymerase Rpb6.	0.972
A0A316TZ59	A0A316U3X6	RNA polymerase I-specific transcription initiation factor RRN3.	Uncharacterized protein.	0.990
A0A316TZ59	A0A316U707	RNA polymerase I-specific transcription initiation factor RRN3.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.787
A0A316TZ59	A0A316U7D7	RNA polymerase I-specific transcription initiation factor RRN3.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.985
A0A316TZ59	A0A316U999	RNA polymerase I-specific transcription initiation factor RRN3.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.910
A0A316TZ59	A0A316U9R1	RNA polymerase I-specific transcription initiation factor RRN3.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.959
A0A316TZ59	A0A316UBJ4	RNA polymerase I-specific transcription initiation factor RRN3.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.995
A0A316TZ59	A0A316UBU9	RNA polymerase I-specific transcription initiation factor RRN3.	TFIIS central domain-containing protein.	0.778
A0A316TZ59	A0A316UCV3	RNA polymerase I-specific transcription initiation factor RRN3.	Uncharacterized protein.	0.966
A0A316TZ59	A0A316UCW8	RNA polymerase I-specific transcription initiation factor RRN3.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.943
A0A316TZ59	A0A316UD53	RNA polymerase I-specific transcription initiation factor RRN3.	Putative 25 kd subunit of DNA-directed RNA polymerases I, II and III.	0.970
A0A316TZ59	A0A316UEF0	RNA polymerase I-specific transcription initiation factor RRN3.	RPOLD domain-containing protein.	0.989
A0A316TZ59	A0A316UJ25	RNA polymerase I-specific transcription initiation factor RRN3.	Putative DNA-directed RNA polymerase II chain RPB10.	0.966
A0A316TZ59	A0A316UJP6	RNA polymerase I-specific transcription initiation factor RRN3.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
A0A316TZ72	A0A316TZ59	RPA43_OB domain-containing protein.	RNA polymerase I-specific transcription initiation factor RRN3.	0.997
A0A316TZ72	A0A316TZW6	RPA43_OB domain-containing protein.	RBP11-like subunits of RNA polymerase.	0.997
A0A316TZ72	A0A316U2R3	RPA43_OB domain-containing protein.	RPOL4c domain-containing protein.	0.530
A0A316TZ72	A0A316U2S2	RPA43_OB domain-containing protein.	RNA polymerase Rpb6.	0.997