(6 nodes) RNA polymerase I complex network (Pseudomicrostroma glucosiphilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A316TZW6	RBP11-like subunits of RNA polymerase. (162 aa)
	A0A316U2S2	RNA polymerase Rpb6. (160 aa)
	A0A316U9R1	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	A0A316UD53	Putative 25 kd subunit of DNA-directed RNA polymerases I, II and III. (207 aa)
	A0A316UEF0	RPOLD domain-containing protein. (341 aa)
	A0A316UJ25	Putative DNA-directed RNA polymerase II chain RPB10. (70 aa)

Your Current Organism:

Pseudomicrostroma glucosiphilum

NCBI taxonomy Id: 1684307
Other names: CBS 14053, MCA 4718, Microstromatales sp. MCA4718, NRRL 66310, P. glucosiphilum, Rhodotorula sp. MCA 4718

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A316TZW6	A0A316U2S2	RBP11-like subunits of RNA polymerase.	RNA polymerase Rpb6.	0.998
A0A316TZW6	A0A316U9R1	RBP11-like subunits of RNA polymerase.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.998
A0A316TZW6	A0A316UD53	RBP11-like subunits of RNA polymerase.	Putative 25 kd subunit of DNA-directed RNA polymerases I, II and III.	0.998
A0A316TZW6	A0A316UEF0	RBP11-like subunits of RNA polymerase.	RPOLD domain-containing protein.	0.998
A0A316TZW6	A0A316UJ25	RBP11-like subunits of RNA polymerase.	Putative DNA-directed RNA polymerase II chain RPB10.	0.998
A0A316U2S2	A0A316TZW6	RNA polymerase Rpb6.	RBP11-like subunits of RNA polymerase.	0.998
A0A316U2S2	A0A316U9R1	RNA polymerase Rpb6.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.998
A0A316U2S2	A0A316UD53	RNA polymerase Rpb6.	Putative 25 kd subunit of DNA-directed RNA polymerases I, II and III.	0.999
A0A316U2S2	A0A316UEF0	RNA polymerase Rpb6.	RPOLD domain-containing protein.	0.999
A0A316U2S2	A0A316UJ25	RNA polymerase Rpb6.	Putative DNA-directed RNA polymerase II chain RPB10.	0.999
A0A316U9R1	A0A316TZW6	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	RBP11-like subunits of RNA polymerase.	0.998
A0A316U9R1	A0A316U2S2	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	RNA polymerase Rpb6.	0.998
A0A316U9R1	A0A316UD53	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Putative 25 kd subunit of DNA-directed RNA polymerases I, II and III.	0.998
A0A316U9R1	A0A316UEF0	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	RPOLD domain-containing protein.	0.998
A0A316U9R1	A0A316UJ25	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Putative DNA-directed RNA polymerase II chain RPB10.	0.998
A0A316UD53	A0A316TZW6	Putative 25 kd subunit of DNA-directed RNA polymerases I, II and III.	RBP11-like subunits of RNA polymerase.	0.998
A0A316UD53	A0A316U2S2	Putative 25 kd subunit of DNA-directed RNA polymerases I, II and III.	RNA polymerase Rpb6.	0.999
A0A316UD53	A0A316U9R1	Putative 25 kd subunit of DNA-directed RNA polymerases I, II and III.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.998
A0A316UD53	A0A316UEF0	Putative 25 kd subunit of DNA-directed RNA polymerases I, II and III.	RPOLD domain-containing protein.	0.999
A0A316UD53	A0A316UJ25	Putative 25 kd subunit of DNA-directed RNA polymerases I, II and III.	Putative DNA-directed RNA polymerase II chain RPB10.	0.999