11 items (Pseudomicrostroma glucosiphilum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A316UG28	Uncharacterized protein. (258 aa)
	A0A316TWZ4	Actin-like ATPase domain-containing protein; Belongs to the actin family. (631 aa)
	A0A316TZL6	Bromo domain-containing protein. (595 aa)
	A0A316U1T5	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (472 aa)
	A0A316U3M7	YL1-domain-containing protein. (752 aa)
	A0A316U4Y5	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (508 aa)
	A0A316U585	Histone H2A; Belongs to the histone H2A family. (150 aa)
	A0A316U5M2	Uncharacterized protein. (1930 aa)
	A0A316U5N7	Myb-like domain-containing protein. (654 aa)
	A0A316U7Z7	Yeats-domain-containing protein. (409 aa)
	A0A316UCS8	BCNT-C domain-containing protein. (352 aa)

Your Current Organism:

Pseudomicrostroma glucosiphilum

NCBI taxonomy Id: 1684307
Other names: CBS 14053, MCA 4718, Microstromatales sp. MCA4718, NRRL 66310, P. glucosiphilum, Rhodotorula sp. MCA 4718

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A316TWZ4	A0A316U1T5	Actin-like ATPase domain-containing protein; Belongs to the actin family.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.979
A0A316TWZ4	A0A316U3M7	Actin-like ATPase domain-containing protein; Belongs to the actin family.	YL1-domain-containing protein.	0.900
A0A316TWZ4	A0A316U4Y5	Actin-like ATPase domain-containing protein; Belongs to the actin family.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.957
A0A316TWZ4	A0A316U585	Actin-like ATPase domain-containing protein; Belongs to the actin family.	Histone H2A; Belongs to the histone H2A family.	0.920
A0A316TWZ4	A0A316U5M2	Actin-like ATPase domain-containing protein; Belongs to the actin family.	Uncharacterized protein.	0.978
A0A316TWZ4	A0A316U5N7	Actin-like ATPase domain-containing protein; Belongs to the actin family.	Myb-like domain-containing protein.	0.811
A0A316TWZ4	A0A316U7Z7	Actin-like ATPase domain-containing protein; Belongs to the actin family.	Yeats-domain-containing protein.	0.729
A0A316TWZ4	A0A316UCS8	Actin-like ATPase domain-containing protein; Belongs to the actin family.	BCNT-C domain-containing protein.	0.620
A0A316TWZ4	A0A316UG28	Actin-like ATPase domain-containing protein; Belongs to the actin family.	Uncharacterized protein.	0.980
A0A316TZL6	A0A316U1T5	Bromo domain-containing protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.884
A0A316TZL6	A0A316U3M7	Bromo domain-containing protein.	YL1-domain-containing protein.	0.830
A0A316TZL6	A0A316U4Y5	Bromo domain-containing protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.862
A0A316TZL6	A0A316U585	Bromo domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.764
A0A316TZL6	A0A316U5M2	Bromo domain-containing protein.	Uncharacterized protein.	0.813
A0A316TZL6	A0A316U5N7	Bromo domain-containing protein.	Myb-like domain-containing protein.	0.854
A0A316TZL6	A0A316U7Z7	Bromo domain-containing protein.	Yeats-domain-containing protein.	0.897
A0A316U1T5	A0A316TWZ4	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Actin-like ATPase domain-containing protein; Belongs to the actin family.	0.979
A0A316U1T5	A0A316TZL6	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Bromo domain-containing protein.	0.884
A0A316U1T5	A0A316U3M7	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	YL1-domain-containing protein.	0.975
A0A316U1T5	A0A316U4Y5	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.999