48 items (Pseudomicrostroma glucosiphilum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A316UCN4	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. BET3 subfamily. (183 aa)
	A0A316TXK8	Uncharacterized protein. (283 aa)
	A0A316TYP8	Uncharacterized protein. (1812 aa)
	A0A316TYU4	Sec2p domain-containing protein. (951 aa)
	A0A316TZJ9	RCC1/BLIP-II. (620 aa)
	A0A316TZL5	RIC1-domain-containing protein. (1274 aa)
	A0A316U077	Ras GEF. (1461 aa)
	A0A316U0C4	Uncharacterized protein. (518 aa)
	A0A316U0F4	SEC7 domain-containing protein. (2094 aa)
	A0A316U0H3	WD40 repeat-like protein. (497 aa)
	A0A316U0H9	Uncharacterized protein. (913 aa)
	A0A316U0M7	Uncharacterized protein. (142 aa)
	A0A316U1C7	DH domain-containing protein. (1169 aa)
	A0A316U1S4	Mog1p/PsbP-like protein. (196 aa)
	A0A316U2I3	DH domain-containing protein. (1436 aa)
	A0A316U484	Uncharacterized protein. (2177 aa)
	A0A316U5H6	VPS9 domain-containing protein. (1010 aa)
	A0A316U762	Uncharacterized protein. (1474 aa)
	A0A316U768	Uncharacterized protein. (1085 aa)
	A0A316U7H9	RCC1/BLIP-II. (350 aa)
	A0A316U839	Uncharacterized protein. (2618 aa)
	A0A316U843	SEC7 domain-containing protein. (1791 aa)
	A0A316U8S4	Trafficking protein particle complex subunit BET3. (209 aa)
	A0A316U9F6	W2 domain-containing protein. (806 aa)
	A0A316U9N4	DH domain-containing protein. (976 aa)
	A0A316U9P1	Ras GEF. (1442 aa)
	A0A316U9P7	DH domain-containing protein. (2027 aa)
	A0A316UA37	Uncharacterized protein. (224 aa)
	A0A316UA51	Uncharacterized protein. (1560 aa)
	A0A316UAF0	SEC7 domain-containing protein. (2319 aa)
	A0A316UBF2	Rgp1-domain-containing protein. (938 aa)
	A0A316UBX9	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum. (95 aa)
	A0A316UC31	Alpha/beta-hydrolase. (310 aa)
	A0A316UCF0	CNH-domain-containing protein. (304 aa)
	A0A316UCM6	CNH domain-containing protein. (1333 aa)
	A0A316UCS7	CNH-domain-containing protein. (1611 aa)
	A0A316UCT9	Uncharacterized protein. (233 aa)
	A0A316UDF6	DUF1630-domain-containing protein. (1003 aa)
	A0A316UE95	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (144 aa)
	A0A316UEE4	Ras GEF. (1554 aa)
	A0A316UEM9	Shwachman-Bodian-diamond syndrome protein. (252 aa)
	A0A316UES5	Uncharacterized protein. (1370 aa)
	A0A316UEX3	Uncharacterized protein. (1097 aa)
	A0A316UEX6	Uncharacterized protein. (1468 aa)
	A0A316UF44	SEC7 domain-containing protein. (1797 aa)
	A0A316UF96	Uncharacterized protein; Belongs to the DOCK family. (2107 aa)
	A0A316UFW0	Uncharacterized protein. (1709 aa)
	A0A316UFW9	Ras GEF. (534 aa)

Your Current Organism:

Pseudomicrostroma glucosiphilum

NCBI taxonomy Id: 1684307
Other names: CBS 14053, MCA 4718, Microstromatales sp. MCA4718, NRRL 66310, P. glucosiphilum, Rhodotorula sp. MCA 4718

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A316TXK8	A0A316U8S4	Uncharacterized protein.	Trafficking protein particle complex subunit BET3.	0.998
A0A316TXK8	A0A316UA51	Uncharacterized protein.	Uncharacterized protein.	0.990
A0A316TXK8	A0A316UCN4	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. BET3 subfamily.	0.996
A0A316TXK8	A0A316UE95	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.998
A0A316TXK8	A0A316UEX6	Uncharacterized protein.	Uncharacterized protein.	0.994
A0A316TYP8	A0A316TZL5	Uncharacterized protein.	RIC1-domain-containing protein.	0.634
A0A316TYP8	A0A316U0F4	Uncharacterized protein.	SEC7 domain-containing protein.	0.513
A0A316TZJ9	A0A316U5H6	RCC1/BLIP-II.	VPS9 domain-containing protein.	0.426
A0A316TZL5	A0A316TYP8	RIC1-domain-containing protein.	Uncharacterized protein.	0.634
A0A316TZL5	A0A316UBF2	RIC1-domain-containing protein.	Rgp1-domain-containing protein.	0.970
A0A316U077	A0A316U1C7	Ras GEF.	DH domain-containing protein.	0.466
A0A316U077	A0A316U484	Ras GEF.	Uncharacterized protein.	0.466
A0A316U077	A0A316U768	Ras GEF.	Uncharacterized protein.	0.606
A0A316U077	A0A316U9N4	Ras GEF.	DH domain-containing protein.	0.466
A0A316U077	A0A316U9P7	Ras GEF.	DH domain-containing protein.	0.473
A0A316U077	A0A316UA37	Ras GEF.	Uncharacterized protein.	0.502
A0A316U077	A0A316UEE4	Ras GEF.	Ras GEF.	0.588
A0A316U0F4	A0A316TYP8	SEC7 domain-containing protein.	Uncharacterized protein.	0.513
A0A316U0F4	A0A316U843	SEC7 domain-containing protein.	SEC7 domain-containing protein.	0.937
A0A316U0F4	A0A316UAF0	SEC7 domain-containing protein.	SEC7 domain-containing protein.	0.544