42 items (Pseudomicrostroma glucosiphilum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A316TZ59	RNA polymerase I-specific transcription initiation factor RRN3. (670 aa)
	A0A316TZ72	RPA43_OB domain-containing protein. (374 aa)
	A0A316TZR9	Uncharacterized protein. (65 aa)
	A0A316U020	Uncharacterized protein. (242 aa)
	A0A316U0P9	Uncharacterized protein. (906 aa)
	A0A316U0R2	Cyclin-like protein. (417 aa)
	A0A316U159	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (250 aa)
	A0A316U1L7	SWIB-domain-containing protein. (341 aa)
	A0A316U2A6	Putative RAD3-DNA helicase/ATPase. (853 aa)
	A0A316U2E5	Uncharacterized protein. (1122 aa)
	A0A316U2R3	RPOL4c domain-containing protein. (160 aa)
	A0A316U2S0	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (119 aa)
	A0A316U3A4	Uncharacterized protein. (823 aa)
	A0A316U3X6	Uncharacterized protein. (531 aa)
	A0A316U4X7	Uncharacterized protein. (843 aa)
	A0A316U5A0	Histone-fold-containing protein. (92 aa)
	A0A316U5I8	TAF domain-containing protein. (535 aa)
	A0A316U5J8	Uncharacterized protein. (1064 aa)
	A0A316U5K9	PHD-type domain-containing protein. (1121 aa)
	A0A316U5T1	TAFII55_N domain-containing protein. (757 aa)
	A0A316U5Y7	Uncharacterized protein. (422 aa)
	A0A316U6E4	Uncharacterized protein. (640 aa)
	A0A316U719	Uncharacterized protein. (257 aa)
	A0A316U797	BRF1-domain-containing protein. (850 aa)
	A0A316U7G6	TAFII28-domain-containing protein. (314 aa)
	A0A316U7P2	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	A0A316U856	Uncharacterized protein. (175 aa)
	A0A316U8T1	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (605 aa)
	A0A316U941	Transcription elongation factor. (332 aa)
	A0A316U9I9	TFIIE domain-containing protein. (443 aa)
	A0A316U9V0	Uncharacterized protein. (1528 aa)
	A0A316UBP5	TFIID_20kDa domain-containing protein. (687 aa)
	A0A316UCF7	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (261 aa)
	A0A316UCU4	Transcription initiation factor TFIID-1. (244 aa)
	A0A316UDF5	TFIID-18kDa-domain-containing protein. (188 aa)
	A0A316UDK0	DNA repair helicase rad25. (914 aa)
	A0A316UDX6	WD40 repeat-like protein. (936 aa)
	A0A316UDZ8	Histone-fold-containing protein. (146 aa)
	A0A316UFG5	TFIID-31kDa-domain-containing protein. (218 aa)
	A0A316UGA3	RPOL4c domain-containing protein. (166 aa)
	A0A316UGL8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (133 aa)
	A0A316UGS1	Uncharacterized protein. (1757 aa)

Your Current Organism:

Pseudomicrostroma glucosiphilum

NCBI taxonomy Id: 1684307
Other names: CBS 14053, MCA 4718, Microstromatales sp. MCA4718, NRRL 66310, P. glucosiphilum, Rhodotorula sp. MCA 4718

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A316TZ59	A0A316TZ72	RNA polymerase I-specific transcription initiation factor RRN3.	RPA43_OB domain-containing protein.	0.997
A0A316TZ59	A0A316U3X6	RNA polymerase I-specific transcription initiation factor RRN3.	Uncharacterized protein.	0.990
A0A316TZ59	A0A316U8T1	RNA polymerase I-specific transcription initiation factor RRN3.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.447
A0A316TZ59	A0A316U941	RNA polymerase I-specific transcription initiation factor RRN3.	Transcription elongation factor.	0.799
A0A316TZ59	A0A316U9V0	RNA polymerase I-specific transcription initiation factor RRN3.	Uncharacterized protein.	0.735
A0A316TZ59	A0A316UCU4	RNA polymerase I-specific transcription initiation factor RRN3.	Transcription initiation factor TFIID-1.	0.846
A0A316TZ59	A0A316UGL8	RNA polymerase I-specific transcription initiation factor RRN3.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.777
A0A316TZ72	A0A316TZ59	RPA43_OB domain-containing protein.	RNA polymerase I-specific transcription initiation factor RRN3.	0.997
A0A316TZ72	A0A316U2A6	RPA43_OB domain-containing protein.	Putative RAD3-DNA helicase/ATPase.	0.656
A0A316TZ72	A0A316U2R3	RPA43_OB domain-containing protein.	RPOL4c domain-containing protein.	0.530
A0A316TZ72	A0A316U3X6	RPA43_OB domain-containing protein.	Uncharacterized protein.	0.999
A0A316TZ72	A0A316U719	RPA43_OB domain-containing protein.	Uncharacterized protein.	0.572
A0A316TZ72	A0A316U856	RPA43_OB domain-containing protein.	Uncharacterized protein.	0.511
A0A316TZ72	A0A316U8T1	RPA43_OB domain-containing protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.452
A0A316TZ72	A0A316U941	RPA43_OB domain-containing protein.	Transcription elongation factor.	0.878
A0A316TZ72	A0A316U9V0	RPA43_OB domain-containing protein.	Uncharacterized protein.	0.634
A0A316TZ72	A0A316UCU4	RPA43_OB domain-containing protein.	Transcription initiation factor TFIID-1.	0.713
A0A316TZ72	A0A316UGA3	RPA43_OB domain-containing protein.	RPOL4c domain-containing protein.	0.522
A0A316TZ72	A0A316UGL8	RPA43_OB domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.915
A0A316TZR9	A0A316U020	Uncharacterized protein.	Uncharacterized protein.	0.819