11 items (Pseudomicrostroma glucosiphilum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A316TYH3	HDAC_interact domain-containing protein. (1600 aa)
	A0A316TZ67	Uncharacterized protein. (246 aa)
	A0A316U940	WD40 repeat-like protein. (852 aa)
	A0A316U356	Arginase/deacetylase. (635 aa)
	A0A316U6B2	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (506 aa)
	A0A316U6H1	PHD-type domain-containing protein. (878 aa)
	A0A316UCM9	DHS-like NAD/FAD-binding domain-containing protein. (998 aa)
	A0A316UCY8	MRG-domain-containing protein. (388 aa)
	A0A316UDH1	Putative chromatin assembly factor 1 subunit C. (439 aa)
	A0A316UG94	Uncharacterized protein. (896 aa)
	A0A316UI52	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (514 aa)

Your Current Organism:

Pseudomicrostroma glucosiphilum

NCBI taxonomy Id: 1684307
Other names: CBS 14053, MCA 4718, Microstromatales sp. MCA4718, NRRL 66310, P. glucosiphilum, Rhodotorula sp. MCA 4718

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A316TYH3	A0A316U356	HDAC_interact domain-containing protein.	Arginase/deacetylase.	0.810
A0A316TYH3	A0A316U6B2	HDAC_interact domain-containing protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.934
A0A316TYH3	A0A316U6H1	HDAC_interact domain-containing protein.	PHD-type domain-containing protein.	0.967
A0A316TYH3	A0A316U940	HDAC_interact domain-containing protein.	WD40 repeat-like protein.	0.704
A0A316TYH3	A0A316UCY8	HDAC_interact domain-containing protein.	MRG-domain-containing protein.	0.939
A0A316TYH3	A0A316UDH1	HDAC_interact domain-containing protein.	Putative chromatin assembly factor 1 subunit C.	0.957
A0A316TYH3	A0A316UG94	HDAC_interact domain-containing protein.	Uncharacterized protein.	0.670
A0A316TYH3	A0A316UI52	HDAC_interact domain-containing protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.934
A0A316TZ67	A0A316U356	Uncharacterized protein.	Arginase/deacetylase.	0.778
A0A316TZ67	A0A316U6B2	Uncharacterized protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.805
A0A316TZ67	A0A316U6H1	Uncharacterized protein.	PHD-type domain-containing protein.	0.877
A0A316TZ67	A0A316U940	Uncharacterized protein.	WD40 repeat-like protein.	0.609
A0A316TZ67	A0A316UCY8	Uncharacterized protein.	MRG-domain-containing protein.	0.835
A0A316TZ67	A0A316UDH1	Uncharacterized protein.	Putative chromatin assembly factor 1 subunit C.	0.901
A0A316TZ67	A0A316UG94	Uncharacterized protein.	Uncharacterized protein.	0.600
A0A316TZ67	A0A316UI52	Uncharacterized protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.805
A0A316U356	A0A316TYH3	Arginase/deacetylase.	HDAC_interact domain-containing protein.	0.810
A0A316U356	A0A316TZ67	Arginase/deacetylase.	Uncharacterized protein.	0.778
A0A316U356	A0A316U6B2	Arginase/deacetylase.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.770
A0A316U356	A0A316U6H1	Arginase/deacetylase.	PHD-type domain-containing protein.	0.573