7 items (Pseudomicrostroma glucosiphilum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A316UEE9	Endo/exonuclease/phosphatase domain-containing protein. (796 aa)
	A0A316UCX1	Leo1-domain-containing protein. (396 aa)
	A0A316UAC5	CDC73-domain-containing protein. (500 aa)
	A0A316U6M3	WD40 repeat-like protein. (490 aa)
	A0A316U525	Uncharacterized protein. (501 aa)
	A0A316U468	Plus3 domain-containing protein. (560 aa)
	A0A316U0H1	Uncharacterized protein. (1428 aa)

Your Current Organism:

Pseudomicrostroma glucosiphilum

NCBI taxonomy Id: 1684307
Other names: CBS 14053, MCA 4718, Microstromatales sp. MCA4718, NRRL 66310, P. glucosiphilum, Rhodotorula sp. MCA 4718

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A316U0H1	A0A316U468	Uncharacterized protein.	Plus3 domain-containing protein.	0.995
A0A316U0H1	A0A316U525	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A316U0H1	A0A316U6M3	Uncharacterized protein.	WD40 repeat-like protein.	0.989
A0A316U0H1	A0A316UAC5	Uncharacterized protein.	CDC73-domain-containing protein.	0.997
A0A316U0H1	A0A316UCX1	Uncharacterized protein.	Leo1-domain-containing protein.	0.997
A0A316U468	A0A316U0H1	Plus3 domain-containing protein.	Uncharacterized protein.	0.995
A0A316U468	A0A316U525	Plus3 domain-containing protein.	Uncharacterized protein.	0.994
A0A316U468	A0A316U6M3	Plus3 domain-containing protein.	WD40 repeat-like protein.	0.921
A0A316U468	A0A316UAC5	Plus3 domain-containing protein.	CDC73-domain-containing protein.	0.994
A0A316U468	A0A316UCX1	Plus3 domain-containing protein.	Leo1-domain-containing protein.	0.994
A0A316U525	A0A316U0H1	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A316U525	A0A316U468	Uncharacterized protein.	Plus3 domain-containing protein.	0.994
A0A316U525	A0A316U6M3	Uncharacterized protein.	WD40 repeat-like protein.	0.982
A0A316U525	A0A316UAC5	Uncharacterized protein.	CDC73-domain-containing protein.	0.998
A0A316U525	A0A316UCX1	Uncharacterized protein.	Leo1-domain-containing protein.	0.998
A0A316U525	A0A316UEE9	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.921
A0A316U6M3	A0A316U0H1	WD40 repeat-like protein.	Uncharacterized protein.	0.989
A0A316U6M3	A0A316U468	WD40 repeat-like protein.	Plus3 domain-containing protein.	0.921
A0A316U6M3	A0A316U525	WD40 repeat-like protein.	Uncharacterized protein.	0.982
A0A316U6M3	A0A316UAC5	WD40 repeat-like protein.	CDC73-domain-containing protein.	0.989