83 items (Pseudomicrostroma glucosiphilum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A316UK62	RING-type domain-containing protein. (484 aa)
	A0A316U5E9	RING-type domain-containing protein. (532 aa)
	A0A316U5H3	Cysteine proteinase. (710 aa)
	A0A316U5K9	PHD-type domain-containing protein. (1121 aa)
	A0A316U5Q2	RING-type domain-containing protein. (1279 aa)
	A0A316U5R8	RING-type domain-containing protein. (341 aa)
	A0A316U5Y4	Ubiquitinyl hydrolase 1. (686 aa)
	A0A316U6B6	PHD-type domain-containing protein. (644 aa)
	A0A316U6H1	PHD-type domain-containing protein. (878 aa)
	A0A316U6X7	RING-CH-type domain-containing protein. (639 aa)
	A0A316U762	Uncharacterized protein. (1474 aa)
	A0A316U7A6	Uncharacterized protein. (1523 aa)
	A0A316U7Z5	RING-type domain-containing protein. (707 aa)
	A0A316U830	Uncharacterized protein. (607 aa)
	A0A316U853	CDK-activating kinase assembly factor. (480 aa)
	A0A316U897	E3 ubiquitin protein ligase. (856 aa)
	A0A316U8D0	RING-type domain-containing protein. (601 aa)
	A0A316U8J5	Uncharacterized protein. (1588 aa)
	A0A316U8K1	Uncharacterized protein. (594 aa)
	A0A316U8N3	RING/U-box. (119 aa)
	A0A316U8T8	Uncharacterized protein. (228 aa)
	A0A316U904	RING-type domain-containing protein. (774 aa)
	A0A316U9B5	RING-CH-type domain-containing protein. (1813 aa)
	A0A316U9D0	RCC1/BLIP-II. (579 aa)
	A0A316U9I9	TFIIE domain-containing protein. (443 aa)
	A0A316UA20	RING-type domain-containing protein. (1064 aa)
	A0A316UAH7	RING-CH-type domain-containing protein. (1675 aa)
	A0A316UAH9	Ubiquitinyl hydrolase 1. (958 aa)
	A0A316UAP1	Uncharacterized protein. (1272 aa)
	A0A316UAU4	Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane. (761 aa)
	A0A316UAZ7	RING-type domain-containing protein. (419 aa)
	A0A316UB57	Uncharacterized protein. (79 aa)
	A0A316UB96	RING-type domain-containing protein. (838 aa)
	A0A316UBA2	RING-type domain-containing protein. (1192 aa)
	A0A316UBE8	Uncharacterized protein. (921 aa)
	A0A316UBJ0	RING/U-box. (85 aa)
	A0A316TWM8	JmjC-domain-containing protein. (1044 aa)
	A0A316TWS7	RING-type domain-containing protein. (612 aa)
	A0A316TZY2	DWNN-domain-containing protein. (630 aa)
	A0A316U034	U-box domain-containing protein. (1091 aa)
	A0A316U050	CTLH domain-containing protein. (441 aa)
	A0A316U065	Beach-domain-containing protein. (2542 aa)
	A0A316U085	Uncharacterized protein. (1041 aa)
	A0A316U0U5	Uncharacterized protein. (621 aa)
	A0A316UBJ1	Uncharacterized protein. (1301 aa)
	A0A316UBS0	WD40 repeat-like protein. (564 aa)
	A0A316UCA9	Uncharacterized protein. (629 aa)
	A0A316UCD1	RING-type domain-containing protein. (375 aa)
	A0A316UD33	RING-type domain-containing protein. (514 aa)
	A0A316UDG2	RING-type domain-containing protein. (532 aa)
	A0A316UDM0	Uncharacterized protein. (834 aa)
	A0A316U1P7	RING-type domain-containing protein. (727 aa)
	A0A316UDQ5	RING-type domain-containing protein. (446 aa)
	A0A316UDY7	RBR-type E3 ubiquitin transferase. (519 aa)
	A0A316UEA4	Uncharacterized protein. (1335 aa)
	A0A316UEH2	UBR-type domain-containing protein. (626 aa)
	A0A316UEU8	Uncharacterized protein. (331 aa)
	A0A316UEW8	Uncharacterized protein. (1581 aa)
	A0A316UEX0	Uncharacterized protein. (1065 aa)
	A0A316UF97	RING-type domain-containing protein. (479 aa)
	A0A316UFB6	FYVE-type domain-containing protein. (824 aa)
	A0A316UFJ1	RING-type domain-containing protein. (702 aa)
	A0A316UFT5	Uncharacterized protein. (1970 aa)
	A0A316UFW6	Uncharacterized protein. (2626 aa)
	A0A316UG58	Uncharacterized protein. (885 aa)
	A0A316UGX5	Uncharacterized protein. (385 aa)
	A0A316UGY9	PHD-type domain-containing protein. (1350 aa)
	A0A316UH11	Uncharacterized protein. (1068 aa)
	A0A316UH59	RING-type domain-containing protein. (936 aa)
	A0A316UII2	Chromatin modification-related protein. (367 aa)
	A0A316UJ49	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (1176 aa)
	A0A316U577	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (530 aa)
	A0A316U1W5	Uncharacterized protein. (1183 aa)
	A0A316U251	Chromatin modification-related protein. (665 aa)
	A0A316U285	SP-RING-type domain-containing protein. (250 aa)
	A0A316U2H1	RBR-type E3 ubiquitin transferase. (462 aa)
	A0A316U2H8	Uncharacterized protein. (1201 aa)
	A0A316U2Z8	Uncharacterized protein. (2474 aa)
	A0A316U4W6	PHD domain-containing protein. (961 aa)
	A0A316U4W7	RING-type domain-containing protein. (446 aa)
	A0A316U4X8	RING-type domain-containing protein. (561 aa)
	A0A316U100	Uncharacterized protein. (783 aa)
	A0A316U1A2	Uncharacterized protein. (1097 aa)

Your Current Organism:

Pseudomicrostroma glucosiphilum

NCBI taxonomy Id: 1684307
Other names: CBS 14053, MCA 4718, Microstromatales sp. MCA4718, NRRL 66310, P. glucosiphilum, Rhodotorula sp. MCA 4718

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A316TWM8	A0A316U085	JmjC-domain-containing protein.	Uncharacterized protein.	0.966
A0A316TWM8	A0A316U1A2	JmjC-domain-containing protein.	Uncharacterized protein.	0.574
A0A316TWM8	A0A316U1W5	JmjC-domain-containing protein.	Uncharacterized protein.	0.591
A0A316TWM8	A0A316U2H8	JmjC-domain-containing protein.	Uncharacterized protein.	0.474
A0A316TWM8	A0A316U4W6	JmjC-domain-containing protein.	PHD domain-containing protein.	0.432
A0A316TWM8	A0A316U5K9	JmjC-domain-containing protein.	PHD-type domain-containing protein.	0.546
A0A316TWM8	A0A316U7A6	JmjC-domain-containing protein.	Uncharacterized protein.	0.457
A0A316TWM8	A0A316U8J5	JmjC-domain-containing protein.	Uncharacterized protein.	0.457
A0A316TWM8	A0A316U9D0	JmjC-domain-containing protein.	RCC1/BLIP-II.	0.582
A0A316TWM8	A0A316UAP1	JmjC-domain-containing protein.	Uncharacterized protein.	0.474
A0A316TWM8	A0A316UCA9	JmjC-domain-containing protein.	Uncharacterized protein.	0.418
A0A316TWM8	A0A316UEA4	JmjC-domain-containing protein.	Uncharacterized protein.	0.474
A0A316TWM8	A0A316UEU8	JmjC-domain-containing protein.	Uncharacterized protein.	0.709
A0A316TWM8	A0A316UFT5	JmjC-domain-containing protein.	Uncharacterized protein.	0.432
A0A316TWM8	A0A316UFW6	JmjC-domain-containing protein.	Uncharacterized protein.	0.847
A0A316TWM8	A0A316UG58	JmjC-domain-containing protein.	Uncharacterized protein.	0.574
A0A316TWM8	A0A316UGY9	JmjC-domain-containing protein.	PHD-type domain-containing protein.	0.432
A0A316TWM8	A0A316UJ49	JmjC-domain-containing protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.649
A0A316TWS7	A0A316U577	RING-type domain-containing protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.463
A0A316TWS7	A0A316U8N3	RING-type domain-containing protein.	RING/U-box.	0.468