37 items (Pseudomicrostroma glucosiphilum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A316UKT3	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (103 aa)
	A0A316U853	CDK-activating kinase assembly factor. (480 aa)
	A0A316U854	RBP11-like subunits of RNA polymerase. (201 aa)
	A0A316U856	Uncharacterized protein. (175 aa)
	A0A316U9M3	Transcription factor Tfb4. (385 aa)
	A0A316U9R1	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	A0A316UA79	Uncharacterized protein. (1779 aa)
	A0A316UAC5	CDC73-domain-containing protein. (500 aa)
	A0A316UB06	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1801 aa)
	A0A316UBJ8	Pkinase-domain-containing protein; Belongs to the protein kinase superfamily. (430 aa)
	A0A316UBU9	TFIIS central domain-containing protein. (175 aa)
	A0A316UCV3	Uncharacterized protein. (87 aa)
	A0A316UCX1	Leo1-domain-containing protein. (396 aa)
	A0A316UD53	Putative 25 kd subunit of DNA-directed RNA polymerases I, II and III. (207 aa)
	A0A316UDK0	DNA repair helicase rad25. (914 aa)
	A0A316UE43	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1201 aa)
	A0A316UEV6	Uncharacterized protein. (695 aa)
	A0A316UF19	Uncharacterized protein. (1123 aa)
	A0A316UFE8	Nuclear cap-binding protein subunit 2. (255 aa)
	A0A316UGA3	RPOL4c domain-containing protein. (166 aa)
	A0A316UGL8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (133 aa)
	A0A316UJ25	Putative DNA-directed RNA polymerase II chain RPB10. (70 aa)
	A0A316UJZ7	Insert subdomain of RNA polymerase alpha subunit. (281 aa)
	A0A316TY24	Uncharacterized protein. (254 aa)
	A0A316TZR9	Uncharacterized protein. (65 aa)
	A0A316U0F7	TFIIS N-terminal domain-containing protein. (455 aa)
	A0A316U0H1	Uncharacterized protein. (1428 aa)
	A0A316U0P9	Uncharacterized protein. (906 aa)
	A0A316U2A6	Putative RAD3-DNA helicase/ATPase. (853 aa)
	A0A316U2S2	RNA polymerase Rpb6. (160 aa)
	A0A316U3S4	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (483 aa)
	A0A316U3S5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1252 aa)
	A0A316U468	Plus3 domain-containing protein. (560 aa)
	A0A316U525	Uncharacterized protein. (501 aa)
	A0A316U577	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (530 aa)
	A0A316U5Y7	Uncharacterized protein. (422 aa)
	A0A316U7V1	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (851 aa)

Your Current Organism:

Pseudomicrostroma glucosiphilum

NCBI taxonomy Id: 1684307
Other names: CBS 14053, MCA 4718, Microstromatales sp. MCA4718, NRRL 66310, P. glucosiphilum, Rhodotorula sp. MCA 4718

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A316TY24	A0A316TZR9	Uncharacterized protein.	Uncharacterized protein.	0.717
A0A316TY24	A0A316U0P9	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A316TY24	A0A316U2A6	Uncharacterized protein.	Putative RAD3-DNA helicase/ATPase.	0.990
A0A316TY24	A0A316U2S2	Uncharacterized protein.	RNA polymerase Rpb6.	0.904
A0A316TY24	A0A316U3S4	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.982
A0A316TY24	A0A316U3S5	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.929
A0A316TY24	A0A316U577	Uncharacterized protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.980
A0A316TY24	A0A316U5Y7	Uncharacterized protein.	Uncharacterized protein.	0.905
A0A316TY24	A0A316U7V1	Uncharacterized protein.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.673
A0A316TY24	A0A316U853	Uncharacterized protein.	CDK-activating kinase assembly factor.	0.998
A0A316TY24	A0A316U854	Uncharacterized protein.	RBP11-like subunits of RNA polymerase.	0.889
A0A316TY24	A0A316U856	Uncharacterized protein.	Uncharacterized protein.	0.906
A0A316TY24	A0A316U9M3	Uncharacterized protein.	Transcription factor Tfb4.	0.996
A0A316TY24	A0A316U9R1	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.902
A0A316TY24	A0A316UB06	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.969
A0A316TY24	A0A316UBJ8	Uncharacterized protein.	Pkinase-domain-containing protein; Belongs to the protein kinase superfamily.	0.997
A0A316TY24	A0A316UBU9	Uncharacterized protein.	TFIIS central domain-containing protein.	0.734
A0A316TY24	A0A316UCV3	Uncharacterized protein.	Uncharacterized protein.	0.902
A0A316TY24	A0A316UD53	Uncharacterized protein.	Putative 25 kd subunit of DNA-directed RNA polymerases I, II and III.	0.908
A0A316TY24	A0A316UDK0	Uncharacterized protein.	DNA repair helicase rad25.	0.983