(34 nodes) Estrogen-dependent gene expression network (Pseudomicrostroma glucosiphilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A316UJZ7	Insert subdomain of RNA polymerase alpha subunit. (281 aa)
	A0A316UJ25	Putative DNA-directed RNA polymerase II chain RPB10. (70 aa)
	A0A316UGL8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (133 aa)
	A0A316UGA3	RPOL4c domain-containing protein. (166 aa)
	A0A316UG64	Glucocorticoid receptor-like (DNA-binding domain). (50 aa)
	A0A316UFG0	GATA-domain-containing protein. (50 aa)
	A0A316UET2	Bromodomain-domain-containing protein. (747 aa)
	A0A316UE08	Cyclin-like protein. (288 aa)
	A0A316UDK3	GATA-domain-containing protein. (50 aa)
	A0A316UD53	Putative 25 kd subunit of DNA-directed RNA polymerases I, II and III. (207 aa)
	A0A316UCV3	Uncharacterized protein. (87 aa)
	A0A316UCU4	Transcription initiation factor TFIID-1. (244 aa)
	A0A316UCU3	Pkinase-domain-containing protein; Belongs to the protein kinase superfamily. (333 aa)
	A0A316UCD7	Uncharacterized protein. (1483 aa)
	A0A316UB80	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (602 aa)
	A0A316UB06	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1801 aa)
	A0A316U9V0	Uncharacterized protein. (1528 aa)
	A0A316U9R1	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	A0A316U984	S-adenosyl-L-methionine-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (511 aa)
	A0A316U856	Uncharacterized protein. (175 aa)
	A0A316U854	RBP11-like subunits of RNA polymerase. (201 aa)
	A0A316U6R0	RNA helicase; Belongs to the DEAD box helicase family. (405 aa)
	A0A316U6I9	Histone H2B; Belongs to the histone H2B family. (144 aa)
	A0A316U5Y7	Uncharacterized protein. (422 aa)
	A0A316TXQ9	BHLH domain-containing protein. (642 aa)
	A0A316U020	Uncharacterized protein. (242 aa)
	A0A316U0F6	GATA-type domain-containing protein. (50 aa)
	A0A316U0I5	Acyl-CoA N-acyltransferase. (342 aa)
	A0A316U0P9	Uncharacterized protein. (906 aa)
	A0A316U2S0	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (119 aa)
	A0A316U2S2	RNA polymerase Rpb6. (160 aa)
	A0A316U5A9	Cyclin N-terminal domain-containing protein. (668 aa)
	A0A316U4U3	Winged helix DNA-binding domain-containing protein. (76 aa)
	A0A316U3S5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1252 aa)

Your Current Organism:

Pseudomicrostroma glucosiphilum

NCBI taxonomy Id: 1684307
Other names: CBS 14053, MCA 4718, Microstromatales sp. MCA4718, NRRL 66310, P. glucosiphilum, Rhodotorula sp. MCA 4718

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A316U020	A0A316U0P9	Uncharacterized protein.	Uncharacterized protein.	0.969
A0A316U020	A0A316U2S0	Uncharacterized protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.998
A0A316U020	A0A316U2S2	Uncharacterized protein.	RNA polymerase Rpb6.	0.956
A0A316U020	A0A316U3S5	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.956
A0A316U020	A0A316U4U3	Uncharacterized protein.	Winged helix DNA-binding domain-containing protein.	0.502
A0A316U020	A0A316U5A9	Uncharacterized protein.	Cyclin N-terminal domain-containing protein.	0.566
A0A316U020	A0A316U5Y7	Uncharacterized protein.	Uncharacterized protein.	0.976
A0A316U020	A0A316U6I9	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.508
A0A316U020	A0A316U854	Uncharacterized protein.	RBP11-like subunits of RNA polymerase.	0.955
A0A316U020	A0A316U856	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A316U020	A0A316U9R1	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.956
A0A316U020	A0A316U9V0	Uncharacterized protein.	Uncharacterized protein.	0.943
A0A316U020	A0A316UB06	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.966
A0A316U020	A0A316UCD7	Uncharacterized protein.	Uncharacterized protein.	0.502
A0A316U020	A0A316UCU4	Uncharacterized protein.	Transcription initiation factor TFIID-1.	0.995
A0A316U020	A0A316UCV3	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A316U020	A0A316UD53	Uncharacterized protein.	Putative 25 kd subunit of DNA-directed RNA polymerases I, II and III.	0.959
A0A316U020	A0A316UE08	Uncharacterized protein.	Cyclin-like protein.	0.659
A0A316U020	A0A316UGA3	Uncharacterized protein.	RPOL4c domain-containing protein.	0.956
A0A316U020	A0A316UGL8	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.956