(28 nodes) Mixed, incl. Bordetella uptake gene, and Protein of unknown function DUF1468 network (Betaproteobacteria bacterium UKL132)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMS31314.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (197 aa)
	AMS31537.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (91 aa)
	AMS31538.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	AMS31762.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	AMS33573.1	C4-dicarboxylate ABC transporter; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (376 aa)
	AMS31792.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)
	AMS33574.1	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (718 aa)
	AMS32138.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (76 aa)
	AMS33663.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
	AMS33667.1	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	AMS32155.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)
	AMS32156.1	Tripartite tricarboxylate transporter TctA; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)
	AMS33684.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)
	AMS32386.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
	AMS32422.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
	AMS32873.1	ABC transporter substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (369 aa)
	AMS32875.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0307 family. (181 aa)
	AMS32877.1	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
	AMS32925.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (501 aa)
	AMS32926.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)
	AMS33250.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (61 aa)
	AMS33251.1	Tricarboxylate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (501 aa)
	AMS33252.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)
	AMS33253.1	Tricarboxylate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)
	cca	Hypothetical protein; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. (408 aa)
	AMS33258.1	Quinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	AMS33259.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	AMS33317.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)

Your Current Organism:

Betaproteobacteria bacterium UKL132

NCBI taxonomy Id: 1690485
Other names: B. bacterium UKL13-2, Betaproteobacteria bacterium UKL13-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMS31537.1	AMS31538.1	AEM42_02385	AEM42_02390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
AMS31537.1	AMS32138.1	AEM42_02385	AEM42_06545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
AMS31537.1	AMS32386.1	AEM42_02385	AEM42_08295	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.534
AMS31537.1	AMS32926.1	AEM42_02385	AEM42_12090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
AMS31537.1	AMS33259.1	AEM42_02385	AEM42_14295	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
AMS31538.1	AMS31537.1	AEM42_02390	AEM42_02385	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
AMS31538.1	AMS32422.1	AEM42_02390	AEM42_08575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
AMS31538.1	AMS32926.1	AEM42_02390	AEM42_12090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
AMS31538.1	AMS33259.1	AEM42_02390	AEM42_14295	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
AMS31538.1	AMS33317.1	AEM42_02390	AEM42_14690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.407
AMS31762.1	AMS32138.1	AEM42_03935	AEM42_06545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.732
AMS31762.1	AMS32155.1	AEM42_03935	AEM42_06660	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
AMS31762.1	AMS32156.1	AEM42_03935	AEM42_06665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tripartite tricarboxylate transporter TctA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
AMS31762.1	AMS32925.1	AEM42_03935	AEM42_12085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
AMS31762.1	AMS32926.1	AEM42_03935	AEM42_12090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
AMS31762.1	AMS33251.1	AEM42_03935	AEM42_14250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tricarboxylate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
AMS31762.1	AMS33252.1	AEM42_03935	AEM42_14255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
AMS31762.1	AMS33663.1	AEM42_03935	AEM42_06550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.537
AMS31792.1	AMS32873.1	AEM42_04130	AEM42_11650	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.	0.828
AMS31792.1	AMS33573.1	AEM42_04130	AEM42_04125	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.	0.915