STRINGSTRING
AMS31288.1 AMS31288.1 AMS31290.1 AMS31290.1 AMS31291.1 AMS31291.1 prmA prmA AMS31366.1 AMS31366.1 AMS31367.1 AMS31367.1 trmB trmB AMS33517.1 AMS33517.1 rlmE rlmE AMS32499.1 AMS32499.1 rlmD rlmD trmJ trmJ AMS33138.1 AMS33138.1 dusA dusA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AMS31288.1Iron transporter; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. (89 aa)
AMS31290.1Hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (267 aa)
AMS31291.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
prmAHypothetical protein; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. (302 aa)
AMS31366.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
AMS31367.123S rRNA methyltransferase; SAM-dependent;catalyzes the methylation of cytosine at position 1962 of the 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology. (393 aa)
trmBtRNA (guanine-N7)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (241 aa)
AMS33517.1Hypothetical protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. (448 aa)
rlmE23S rRNA methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. (221 aa)
AMS32499.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (186 aa)
rlmD23S rRNA methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. (454 aa)
trmJHypothetical protein; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. (260 aa)
AMS33138.1Inositol monophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the inositol monophosphatase superfamily. (262 aa)
dusAtRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. (321 aa)
Your Current Organism:
Betaproteobacteria bacterium UKL132
NCBI taxonomy Id: 1690485
Other names: B. bacterium UKL13-2, Betaproteobacteria bacterium UKL13-2
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