(25 nodes) ATP-binding cassette (ABC) transporter complex network (Betaproteobacteria bacterium UKL132)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMS33219.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (536 aa)
	AMS31203.1	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	AMS31227.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	AMS31380.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (504 aa)
	AMS31410.1	Alkylphosphonate ABC transporter substrate-binding protein; With PhnCE is involved in the transport of phosphonates; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	AMS33522.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	AMS33546.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)
	AMS31698.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	AMS31701.1	Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	AMS31745.1	Cell division protein FtsE; ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	AMS31972.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	AMS31973.1	Amino acid ABC transporter permease; With HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
	AMS33623.1	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
	AMS33624.1	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
	AMS32222.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (597 aa)
	AMS33718.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (359 aa)
	AMS33744.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (613 aa)
	AMS32461.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (608 aa)
	AMS33745.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (617 aa)
	AMS32527.1	Amino acid ABC transporter permease; With GltJLPS and GadC for glutamate and GltJLP, DctA and DcuAB for aspartate is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	AMS32908.1	Phosphate ABC transporter substrate-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family. (347 aa)
	AMS33000.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (533 aa)
	AMS33077.1	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
	AMS33211.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (534 aa)
	AMS33217.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (520 aa)

Your Current Organism:

Betaproteobacteria bacterium UKL132

NCBI taxonomy Id: 1690485
Other names: B. bacterium UKL13-2, Betaproteobacteria bacterium UKL13-2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMS31203.1	AMS31410.1	AEM42_00175	AEM42_01550	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkylphosphonate ABC transporter substrate-binding protein; With PhnCE is involved in the transport of phosphonates; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
AMS31203.1	AMS32908.1	AEM42_00175	AEM42_11915	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter substrate-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.488
AMS31203.1	AMS33623.1	AEM42_00175	AEM42_05620	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.537
AMS31203.1	AMS33624.1	AEM42_00175	AEM42_05625	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
AMS31227.1	AMS31701.1	AEM42_00325	AEM42_03580	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
AMS31227.1	AMS32527.1	AEM42_00325	AEM42_09335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; With GltJLPS and GadC for glutamate and GltJLP, DctA and DcuAB for aspartate is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
AMS31380.1	AMS32222.1	AEM42_01335	AEM42_07080	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
AMS31380.1	AMS32461.1	AEM42_01335	AEM42_08860	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
AMS31380.1	AMS33000.1	AEM42_01335	AEM42_12605	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
AMS31380.1	AMS33211.1	AEM42_01335	AEM42_14015	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
AMS31380.1	AMS33217.1	AEM42_01335	AEM42_14060	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.537
AMS31380.1	AMS33219.1	AEM42_01335	AEM42_14070	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
AMS31380.1	AMS33744.1	AEM42_01335	AEM42_08855	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
AMS31380.1	AMS33745.1	AEM42_01335	AEM42_08865	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
AMS31410.1	AMS31203.1	AEM42_01550	AEM42_00175	Alkylphosphonate ABC transporter substrate-binding protein; With PhnCE is involved in the transport of phosphonates; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
AMS31410.1	AMS32908.1	AEM42_01550	AEM42_11915	Alkylphosphonate ABC transporter substrate-binding protein; With PhnCE is involved in the transport of phosphonates; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter substrate-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.541
AMS31410.1	AMS33623.1	AEM42_01550	AEM42_05620	Alkylphosphonate ABC transporter substrate-binding protein; With PhnCE is involved in the transport of phosphonates; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
AMS31410.1	AMS33624.1	AEM42_01550	AEM42_05625	Alkylphosphonate ABC transporter substrate-binding protein; With PhnCE is involved in the transport of phosphonates; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.622
AMS31698.1	AMS31701.1	AEM42_03555	AEM42_03580	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
AMS31698.1	AMS33077.1	AEM42_03555	AEM42_13120	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584