(36 nodes) Outer membrane-bounded periplasmic space network (Betaproteobacteria bacterium UKL132)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMS33219.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (536 aa)
	AMS33471.1	Molybdenum ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
	AMS31380.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (504 aa)
	AMS31381.1	Peptidase C45; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
	AMS33490.1	Cytochrome C550; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S11 family. (377 aa)
	AMS33533.1	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
	AMS33926.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (444 aa)
	AMS33556.1	Thiol:disulfide interchange protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)
	AMS33567.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)
	AMS31768.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (319 aa)
	AMS33572.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S11 family. (311 aa)
	AMS31941.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	cpoB	Hypothetical protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family. (298 aa)
	AMS32014.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	AMS33655.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
	AMS32134.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)
	AMS33670.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
	AMS32222.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (597 aa)
	AMS33682.1	Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M16 family. (913 aa)
	AMS33723.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
	AMS32391.1	Gamma-glutamyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (666 aa)
	AMS32394.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)
	AMS32418.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)
	AMS33744.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (613 aa)
	AMS32461.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (608 aa)
	AMS33745.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (617 aa)
	AMS33835.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
	AMS33840.1	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)
	lnt	Hypothetical protein; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. (516 aa)
	AMS32908.1	Phosphate ABC transporter substrate-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family. (347 aa)
	AMS33859.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (532 aa)
	AMS33000.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (533 aa)
	AMS33199.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)
	AMS33211.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (534 aa)
	AMS33917.1	Gamma-glutamyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (585 aa)
	AMS33217.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (520 aa)

Your Current Organism:

Betaproteobacteria bacterium UKL132

NCBI taxonomy Id: 1690485
Other names: B. bacterium UKL13-2, Betaproteobacteria bacterium UKL13-2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMS31380.1	AMS31381.1	AEM42_01335	AEM42_01340	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase C45; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.828
AMS31380.1	AMS32222.1	AEM42_01335	AEM42_07080	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
AMS31380.1	AMS32461.1	AEM42_01335	AEM42_08860	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
AMS31380.1	AMS33000.1	AEM42_01335	AEM42_12605	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
AMS31380.1	AMS33211.1	AEM42_01335	AEM42_14015	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
AMS31380.1	AMS33217.1	AEM42_01335	AEM42_14060	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.537
AMS31380.1	AMS33219.1	AEM42_01335	AEM42_14070	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
AMS31380.1	AMS33744.1	AEM42_01335	AEM42_08855	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
AMS31380.1	AMS33745.1	AEM42_01335	AEM42_08865	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
AMS31381.1	AMS31380.1	AEM42_01340	AEM42_01335	Peptidase C45; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.828
AMS32222.1	AMS31380.1	AEM42_07080	AEM42_01335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
AMS32222.1	AMS32461.1	AEM42_07080	AEM42_08860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
AMS32222.1	AMS33219.1	AEM42_07080	AEM42_14070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
AMS32222.1	AMS33744.1	AEM42_07080	AEM42_08855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
AMS32222.1	AMS33745.1	AEM42_07080	AEM42_08865	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
AMS32391.1	AMS33859.1	AEM42_08330	AEM42_12080	Gamma-glutamyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
AMS32391.1	AMS33917.1	AEM42_08330	AEM42_14025	Gamma-glutamyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gamma-glutamyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
AMS32461.1	AMS31380.1	AEM42_08860	AEM42_01335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
AMS32461.1	AMS32222.1	AEM42_08860	AEM42_07080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
AMS32461.1	AMS33219.1	AEM42_08860	AEM42_14070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406