(5 nodes) Mixed, incl. VanZ-like, and Protein of unknown function DUF6597 network (Pseudonocardia sp. HH13063007)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANY05051.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
	ANY06041.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (444 aa)
	ANY08209.1	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (161 aa)
	ANY08210.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	ANY09153.1	NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)

Your Current Organism:

Pseudonocardia sp. HH13063007

NCBI taxonomy Id: 1690815
Other names: P. sp. HH130630-07, Pseudonocardia sp. HH130630-07

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANY05051.1	ANY06041.1	AFB00_00435	AFB00_06670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
ANY06041.1	ANY05051.1	AFB00_06670	AFB00_00435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
ANY08209.1	ANY08210.1	AFB00_20180	AFB00_20185	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
ANY08210.1	ANY08209.1	AFB00_20185	AFB00_20180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795