(90 nodes) Mixed, incl. His Kinase A (phosphoacceptor) domain, and Transcriptional regulatory protein WalR-like network (Paenibacillus sp. 32OW)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALS25654.1	Chemotaxis protein CheY. (132 aa)
	ALS25696.1	Signal transduction histidine kinase. (742 aa)
	ALS25911.1	Hypothetical protein. (174 aa)
	ALS25914.1	Two-component system sensor histidine kinase. (507 aa)
	ALS25915.1	Two-component system response regulator. (257 aa)
	ALS25916.1	Two-component system response regulator. (224 aa)
	ALS25917.1	Two-component system sensor histidine kinase. (465 aa)
	ALS25918.1	Bacitracin ABC transporter ATP-binding protein. (304 aa)
	ALS25919.1	Permease. (237 aa)
	ALS25920.1	Membrane protein. (241 aa)
	ALS25923.1	Histidine kinase. (759 aa)
	ALS26471.1	Histidine kinase. (637 aa)
	ALS26669.1	PAS domain-containing two-component system sensor histidine kinase. (604 aa)
	ALS26673.1	Two-component system response regulator. (232 aa)
	ALS26674.1	Two-component system sensor histidine kinase. (476 aa)
	ALS26675.1	Putative lipoprotein. (370 aa)
	ALS26676.1	Galactonate dehydratase. (382 aa)
	ALS26677.1	SMP-30/gluconolaconase/LRE domain-containing protein. (292 aa)
	ALS26740.1	Membrane protein. (160 aa)
	ALS26741.1	Membrane protein. (273 aa)
	ALS26742.1	Multidrug ABC transporter permease. (638 aa)
	ALS26743.1	Two-component system response regulator. (224 aa)
	ALS26744.1	Two-component system sensor histidine kinase. (378 aa)
	ALS26816.1	Two-component system response regulator. (230 aa)
	ALS26817.1	Two-component system sensor histidine kinase. (499 aa)
	ALS26824.1	Two-component system response regulator. (238 aa)
	ALS26854.1	Diguanylate cyclase. (637 aa)
	ALS27060.1	Two-component system response regulator. (231 aa)
	ALS27061.1	Two-component system sensor histidine kinase. (380 aa)
	ALS27062.1	Lactoylglutathione lyase. (151 aa)
	ALS27440.1	Diguanylate cyclase. (629 aa)
	ALS27639.1	Two-component system sensor histidine kinase. (490 aa)
	ALS27640.1	Two-component system response regulator. (228 aa)
	ALS27641.1	Swarming motility protein SwrC; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1107 aa)
	ALS27826.1	Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (300 aa)
	ALS27829.1	Cell wall hydrolase/autolysin. (477 aa)
	ALS27830.1	Lipoprotein LpqB. (180 aa)
	ALS27832.1	Subunit alpha of NAD/NADP transhydrogenase. (90 aa)
	ALS27833.1	Dynamin. (1226 aa)
	ALS27834.1	Two-component system response regulator. (233 aa)
	ALS27835.1	Two-component system sensor histidine kinase. (490 aa)
	ALS27836.1	Lipoprotein localization protein LolA/LolB/LppX. (370 aa)
	ALS27837.1	Peptidase M48. (576 aa)
	ALS27849.1	Pseudouridine synthase. (245 aa)
	ALS27850.1	SAM-dependent methyltransferase. (289 aa)
	ALS27851.1	Two-component system response regulator. (241 aa)
	ALS27852.1	Integral membrane sensor signal transduction histidine kinase. (696 aa)
	ALS27961.1	Two-component system response regulator. (232 aa)
	ALS27962.1	Two-component system sensor histidine kinase. (451 aa)
	ALS27982.1	Bacitracin ABC transporter ATP-binding protein. (238 aa)
	ALS27983.1	ABC-2 family transporter protein. (252 aa)
	ALS27984.1	MutG family lantibiotic protection ABC transporter permease. (263 aa)
	ALS27985.1	Two-component system response regulator. (235 aa)
	ALS27986.1	Two-component system sensor histidine kinase. (490 aa)
	ALS28294.1	Signal transduction response regulator. (101 aa)
	ALS28295.1	Multi-sensor hybrid histidine kinase. (946 aa)
	ALS28316.1	Diguanylate cyclase. (749 aa)
	ALS28806.1	Hypothetical protein. (178 aa)
	ALS28807.1	Two-component system sensor histidine kinase. (439 aa)
	ALS28808.1	Two-component system response regulator. (227 aa)
	ALS28882.1	Two-component system response regulator. (190 aa)
	ALS28883.1	Two-component system sensor histidine kinase. (354 aa)
	ALS28890.1	Regulator. (212 aa)
	ALS28891.1	Histidine kinase. (475 aa)
	ALS29065.1	Two-component system sensor histidine kinase. (448 aa)
	ALS29066.1	Two-component system response regulator. (238 aa)
	ALS29104.1	PAS domain-containing two-component system sensor histidine kinase. (518 aa)
	ALS29226.1	Two-component system response regulator. (239 aa)
	ALS29227.1	Histidine kinase. (602 aa)
	ALS29228.1	Bile acid:sodium symporter. (310 aa)
	ALS29393.1	Histidine kinase. (456 aa)
	ALS29470.1	Signal transduction response regulator. (138 aa)
	ALS29627.1	PAS domain-containing two-component system sensor histidine kinase/response regulator. (560 aa)
	ALS29782.1	Multi-sensor signal transduction histidine kinase. (549 aa)
	ALS29834.1	Two-component system sensor histidine kinase. (477 aa)
	ALS29835.1	Two-component system response regulator. (242 aa)
	ALS29836.1	Alpha/beta hydrolase. (759 aa)
	ALS29837.1	Penicillin-binding protein. (698 aa)
	ALS29838.1	Hypothetical protein. (29 aa)
	ALS29948.1	PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase. (715 aa)
	ALS29950.1	Protein kinase-like domain-containing protein. (352 aa)
	ALS29995.1	Two-component system sensor histidine kinase. (470 aa)
	ALS29996.1	Two-component system response regulator. (291 aa)
	ALS29997.1	Hypothetical protein. (510 aa)
	ALS29998.1	Chitooligosaccharide deacetylase. (318 aa)
	ALS30020.1	Alginate lyase. (619 aa)
	ALS30131.1	PAS domain-containing two-component system sensor histidine kinase. (598 aa)
	ALS30140.1	Signal transduction response regulator. (235 aa)
	ALS30141.1	Signal transduction histidine kinase. (126 aa)
	ALS30157.1	Glycoside hydrolase. (1065 aa)

Your Current Organism:

Paenibacillus sp. 32OW

NCBI taxonomy Id: 1695218
Other names: P. sp. 32O-W, Paenibacillus sp. 32O-W

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALS25654.1	ALS25696.1	IJ21_02100	IJ21_02520	Chemotaxis protein CheY.	Signal transduction histidine kinase.	0.972
ALS25654.1	ALS25914.1	IJ21_02100	IJ21_04820	Chemotaxis protein CheY.	Two-component system sensor histidine kinase.	0.752
ALS25654.1	ALS25915.1	IJ21_02100	IJ21_04830	Chemotaxis protein CheY.	Two-component system response regulator.	0.730
ALS25654.1	ALS25916.1	IJ21_02100	IJ21_04840	Chemotaxis protein CheY.	Two-component system response regulator.	0.727
ALS25654.1	ALS25923.1	IJ21_02100	IJ21_04910	Chemotaxis protein CheY.	Histidine kinase.	0.969
ALS25654.1	ALS26471.1	IJ21_02100	IJ21_10620	Chemotaxis protein CheY.	Histidine kinase.	0.972
ALS25654.1	ALS26669.1	IJ21_02100	IJ21_12650	Chemotaxis protein CheY.	PAS domain-containing two-component system sensor histidine kinase.	0.952
ALS25654.1	ALS26674.1	IJ21_02100	IJ21_12700	Chemotaxis protein CheY.	Two-component system sensor histidine kinase.	0.721
ALS25654.1	ALS26744.1	IJ21_02100	IJ21_13400	Chemotaxis protein CheY.	Two-component system sensor histidine kinase.	0.733
ALS25654.1	ALS26817.1	IJ21_02100	IJ21_14130	Chemotaxis protein CheY.	Two-component system sensor histidine kinase.	0.623
ALS25654.1	ALS27061.1	IJ21_02100	IJ21_16590	Chemotaxis protein CheY.	Two-component system sensor histidine kinase.	0.645
ALS25654.1	ALS27639.1	IJ21_02100	IJ21_22420	Chemotaxis protein CheY.	Two-component system sensor histidine kinase.	0.516
ALS25654.1	ALS27835.1	IJ21_02100	IJ21_24390	Chemotaxis protein CheY.	Two-component system sensor histidine kinase.	0.494
ALS25654.1	ALS27852.1	IJ21_02100	IJ21_24560	Chemotaxis protein CheY.	Integral membrane sensor signal transduction histidine kinase.	0.610
ALS25654.1	ALS27962.1	IJ21_02100	IJ21_25660	Chemotaxis protein CheY.	Two-component system sensor histidine kinase.	0.580
ALS25654.1	ALS27985.1	IJ21_02100	IJ21_25890	Chemotaxis protein CheY.	Two-component system response regulator.	0.736
ALS25654.1	ALS27986.1	IJ21_02100	IJ21_25900	Chemotaxis protein CheY.	Two-component system sensor histidine kinase.	0.550
ALS25654.1	ALS28294.1	IJ21_02100	IJ21_28980	Chemotaxis protein CheY.	Signal transduction response regulator.	0.751
ALS25654.1	ALS28807.1	IJ21_02100	IJ21_34180	Chemotaxis protein CheY.	Two-component system sensor histidine kinase.	0.728
ALS25654.1	ALS28882.1	IJ21_02100	IJ21_34930	Chemotaxis protein CheY.	Two-component system response regulator.	0.697