(9 nodes) RNA polymerase sigma-70 network (Paenibacillus sp. 32OW)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALS26157.1	DNA-directed RNA polymerase sigma-70 factor. (216 aa)
	ALS27150.1	DNA-directed RNA polymerase sigma-70 factor. (147 aa)
	ALS27213.1	DNA-directed RNA polymerase sigma-70 factor. (89 aa)
	ALS27217.1	DNA-directed RNA polymerase sigma-70 factor. (81 aa)
	sigA	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (384 aa)
	ALS27361.1	DNA-directed RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (240 aa)
	ALS27362.1	Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (272 aa)
	ALS27573.1	RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. (261 aa)
	ALS27706.1	Sporulation sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (251 aa)

Your Current Organism:

Paenibacillus sp. 32OW

NCBI taxonomy Id: 1695218
Other names: P. sp. 32O-W, Paenibacillus sp. 32O-W

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALS27150.1	ALS27213.1	IJ21_17490	IJ21_18120	DNA-directed RNA polymerase sigma-70 factor.	DNA-directed RNA polymerase sigma-70 factor.	0.975
ALS27150.1	ALS27217.1	IJ21_17490	IJ21_18160	DNA-directed RNA polymerase sigma-70 factor.	DNA-directed RNA polymerase sigma-70 factor.	0.885
ALS27213.1	ALS27150.1	IJ21_18120	IJ21_17490	DNA-directed RNA polymerase sigma-70 factor.	DNA-directed RNA polymerase sigma-70 factor.	0.975
ALS27213.1	ALS27362.1	IJ21_18120	IJ21_19610	DNA-directed RNA polymerase sigma-70 factor.	Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.792
ALS27213.1	ALS27706.1	IJ21_18120	IJ21_23090	DNA-directed RNA polymerase sigma-70 factor.	Sporulation sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.773
ALS27217.1	ALS27150.1	IJ21_18160	IJ21_17490	DNA-directed RNA polymerase sigma-70 factor.	DNA-directed RNA polymerase sigma-70 factor.	0.885
ALS27217.1	ALS27362.1	IJ21_18160	IJ21_19610	DNA-directed RNA polymerase sigma-70 factor.	Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.778
ALS27217.1	ALS27706.1	IJ21_18160	IJ21_23090	DNA-directed RNA polymerase sigma-70 factor.	Sporulation sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.744
ALS27361.1	ALS27362.1	IJ21_19600	IJ21_19610	DNA-directed RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.792
ALS27362.1	ALS27213.1	IJ21_19610	IJ21_18120	Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	DNA-directed RNA polymerase sigma-70 factor.	0.792
ALS27362.1	ALS27217.1	IJ21_19610	IJ21_18160	Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	DNA-directed RNA polymerase sigma-70 factor.	0.778
ALS27362.1	ALS27361.1	IJ21_19610	IJ21_19600	Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	DNA-directed RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.792
ALS27706.1	ALS27213.1	IJ21_23090	IJ21_18120	Sporulation sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	DNA-directed RNA polymerase sigma-70 factor.	0.773
ALS27706.1	ALS27217.1	IJ21_23090	IJ21_18160	Sporulation sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	DNA-directed RNA polymerase sigma-70 factor.	0.744